UFO08491.5prime Sequence
911 bp (910 high quality bases) assembled on 2011-07-29
> UFO08491.5prime
CAGTCGACATGCGTGTAATTGCGCCGCGTAGATCGTCAACGTCAGCGGCG
GGCAGCGGCAGTCTCTACGGTACATCGGCGGTCGGCACCTCCAGCGGCAG
CACCACCAGCAGCAACTCCACCAGCGGCAGTCACCACATCAGCATCACCG
GAAGCGGTGCGGTGGATCGGACCAGCGGAGGCGCCGCCACGAACGGTTAC
TCCCGCATATCGAGCAGCTACGACCGCGGCAGCAGTCTGTCCAAGTGGCT
GCCCACCTCGTCCGGCGGCTCCAACTCGTCGGGCTACGGCAGCAGCTACT
ATCCCACCTCTTACTCAACGTTCTCCGCCAACAGCGGCTCCTCAAGCGCC
TCGTATGCGCCGCGCTCCAGTGTGCAGAGGAGCAGCGTTGGTACCACGTC
GTCAACGTCGTATATGAGCGGCGGATCCGGCAGCAGCTCGTCCGCCTACC
GCACCTCCTCGTATCTGAGCGGGTCCAGCTATGATTCACCTACGTACAGC
CGATACGGATTACCGCGCAAAGCGGCGTCCAGAATTACCACCAACGGGGA
CAGCTTGAGCGGATCGGCCAAGAGGGAGGACTACGGTCTACGGCGTGGTC
ATGATACCCGTCAAGAAACCACCGATCAGCGGGAGGGGAGTGTTGGCCAC
AACTGCAGCAGCAGCACTGCGAGTAGAGACACCAAAGCCGTCGATGGCAC
AAAACGGCTGTCCAGTTCATCCTCATCTCATCGCTGGCCCGTTTGGTGGC
CACCTCCGGACTGGACATTTATGAAAAGTACAGTCCGGCCAACTATAAAC
CCACTGTGAACTGTCACGTTTCCAGGTCGGGGCATTCTGAAACGGATCTA
GAAACCGGAAGCAACAATGAGACCACCCCCCACCTGTACGGTGACCCTGG
ATAGGCATGGA
UFO08491.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14619-RG | 5178 | CG14619-RG | 333..1233 | 9..911 | 4225 | 98.3 | Plus |
| CG14619-RA | 3434 | CG14619-RA | 573..1473 | 9..911 | 4225 | 98.3 | Plus |
| CG14619-RD | 3247 | CG14619-RD | 386..1286 | 9..911 | 4225 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22457760..22458260 | 9..509 | 2505 | 100 | Plus |
| X | 23542271 | X | 22462400..22462793 | 510..906 | 1560 | 96.2 | Plus |
Blast to na_te.dros performed 2014-11-26 17:25:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 131..195 | 86..147 | 146 | 73.8 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9161..9225 | 86..147 | 146 | 73.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6856 | 105..235 | 139 | 59.1 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7955..7986 | 98..129 | 115 | 84.4 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9399..9430 | 98..129 | 115 | 84.4 | Plus |
UFO08491.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:48 Download gff for
UFO08491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14619-RA | 566..1472 | 1..910 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:31:27 Download gff for
UFO08491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14619-RD | 379..1285 | 1..910 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:59:52 Download gff for
UFO08491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14619-RD | 379..1285 | 1..910 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:59:52 Download gff for
UFO08491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22457753..22458260 | 1..509 | 99 | -> | Plus |
| X | 22462400..22462798 | 510..910 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:31:27 Download gff for
UFO08491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21864236..21864634 | 510..910 | 96 | | Plus |
| arm_X | 21859589..21860096 | 1..509 | 99 | -> | Plus |
