UFO08493.5prime Sequence
1143 bp (955 high quality bases) assembled on 2011-07-29
> UFO08493.5prime
CAGTCGACATGGGAAGTGATCGCACGTTAAAAAAGCAAAAGATGTCGGTA
TTACAGGAACTCAAGAAAATCACCACAATTGTGGCTGACACCGGCGACTT
TGAAGCCATCAACATCTATAAGCCCACGGATGCCACCACTAATCCCTCCC
TCATCTTGTCCGCTTCGTCCATGGAGCGGTACCAGCCGCTGGTCCAAAAG
GCGGTGGAATACGCCAAGGGCAAGAAGGGCTCCGTGAGTGAGCAGGTGGC
CGAGGCCATGGACTACCTGTGCGTGCTGTTCGGAACGGAAATCCTGAAGG
TTGTGCCCGGTCGCGTTTCCACCGAGATCGATGCCCGCTTGTCCTTCGAC
ACCAAGAAGAGCGTGGAGAAGGCCCTGAAGCTGATCGCCCTGTACAAATC
CCTGGGCGTCGACAAGGAGCGAATTCTGATCAAGCTGGCGTCCACCTGGG
AGGGCATCAAGGCGGCCGAGATCCTGGAGAACGAGCACGGTGTGCACTGC
AACCTGACGCTCCTTTTCTCGTTCGCACAGGCCGTGGCTTGCGCCGAGGC
CGGCGTGACCCTCATCTCCCCGTTCGTGGGCCGCATCCTGGACTGGTACG
TGGCCAACACGGATACCAAGAAGTTCGAGGCGCTCAAGGACCCGGGCGTG
ATCTCCGTGACGAACATCTACAACTACTACAAGAAGTTCGGCTACAAGAC
CCTGGTCATGGGCGCCTCCTTCCGTAACGTGGGCGAAATCAAGGCCCTGG
CTGGCTGCGATCTGCTTACCATCAGCCCAGCGCTGCTTAAGGGAGCTGGA
GAAACGAGACCGAGTCGGTGGTCACCTACCTGTCCGTAACAACGCCAAGC
TGCAGGACATCGAAAAATCACCGTCGAAGAAAGCCGGTTCCGCTGGCTGC
TCAACGAGGACGCCATGGCCACCGAAAACTTTCCGAAGGCATCAGGAAGT
TCGCCGTGGAATACTGTTAAGCTGGAAATTGATTAAGACCTATTCTTAAG
CAAGCTTTTCTAGAACCATTCGTTTGGCCGCGCGGGCCAGTAGTGGATCA
TAATCATAACTATTATCATAATCATAACCAAACTTAGCTAGAGAATTCCT
GGTCATGAACTTAGTCTTGAATTCTCACAATATAAAAGCCCCG
UFO08493.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tal-RA | 1116 | CG2827-RA | 21..1013 | 9..1000 | 4700 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23941239..23942005 | 229..993 | 3410 | 98.3 | Plus |
| 2R | 25286936 | 2R | 23941055..23941180 | 104..229 | 630 | 100 | Plus |
| 2R | 25286936 | 2R | 23940430..23940526 | 9..105 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:25:40 has no hits.
UFO08493.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:50 Download gff for
UFO08493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tal-RA | 18..1019 | 9..1010 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:31:30 Download gff for
UFO08493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tal-RA | 21..1022 | 9..1010 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:59:56 Download gff for
UFO08493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tal-RA | 21..1022 | 9..1010 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:59:56 Download gff for
UFO08493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23940430..23940526 | 9..105 | 100 | -> | Plus |
| 2R | 23941057..23941180 | 106..229 | 100 | -> | Plus |
| 2R | 23941240..23942020 | 230..1010 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:31:30 Download gff for
UFO08493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19827953..19828049 | 9..105 | 100 | -> | Plus |
| arm_2R | 19828580..19828703 | 106..229 | 100 | -> | Plus |
| arm_2R | 19828763..19829543 | 230..1010 | 97 | | Plus |
