UFO08496.5prime Sequence
1122 bp (990 high quality bases) assembled on 2011-07-29
> UFO08496.5prime
CAGTCGACATGACTGTCTCTTACACCGCTGAGGTGGCAACATGCAGCCAT
TTCGGCTGCTTCTGGAAGCTTTTGATGAGATGGCGCGCAAGTATCTACAA
GATAATATGGGTGGATCTTCTGGCATTCCTGTCCTGCTTCTACTTCATGG
CTGTAATATATCGCTATGCTCTCAGGGACGTCGATAAGCCTGTTTTCGAG
GACATTGTGATGTACTGTCATAGCTATAGCAACCTGATTCCGCTCTCTTT
CGTACTGGGATTTTATGTGGGCATTATCATAGAACGCTGGTGGAATCAAT
ATATCACAGTTCCTTGGCCCGATCCGCTGGCGGTTTATGTGAGTGCCTTG
GTCCGTGGCCAAGATGAACATGGTCGTCTGATGAGACGCACGATTATGAG
ATATGTGTGCTTGGCATTGACTATGGTGCTCTCGATGATATCGCCAGTTA
TAAAGCGTCGCTTTCCAACCTACGATCAGTTAATTGAGGTGGGTTTGCTA
AACGCCAACGAGGCAAATATTATGAAGGCAATGGATGTGAAGTTTCCAAA
GCACCCAAAGTATTGGATGCCCATTGTCTGGGCCGCCAGTATTGTAACAA
GGGCTCGAAAGGAAGGTCGAATTTGGGATGACTTCTCCCCTGAAGTCCAT
GATAGATGAGCTCAATAAATTCCGAGCTGGATGCAATATGCTCATCCATT
ACGATACAATCTCAGTGCCATTGGTCTATACACAGGTCGTCACCCTGGCC
GTCTACTCGTACTTTGTGGCCTCGATATTTGGTCACCAGTGGGATCGATC
GGGATATTAAGCACTACAATAATATTGTTAGTTACTACTTTCCCGTTGTT
CACCACTCTGGAGTTTTTCTTCTTCATGGGCTGGCTAAAGTGCCCGAACA
TTGATTTGTCCTTTGGCGATGACGACAATGACTTTGAACTGAACTGGCTG
ATCGATCGCAACTTGCAGTGAGTACCTGATCGTTGATGAAATGCACAATG
ATCATTCCCCAGTTGGTGAGGGAATCAGTATTGGGATGAAGTGTTTCCCG
CTGAAATTGCCCAATAGCCCGTGGAGCCGAAATAGGACCGAACACTCCGG
AGAGGCATCCACCGCTCTGATT
UFO08496.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Best3-RA | 1694 | CG12327-RA | 46..1147 | 9..1117 | 4935 | 97.1 | Plus |
| Best1-RD | 2930 | CG6264-RD | 994..1097 | 564..668 | 215 | 81 | Plus |
| Best1-RC | 3074 | CG6264-RC | 994..1097 | 564..668 | 215 | 81 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15301887..15302432 | 737..191 | 2670 | 99.6 | Minus |
| 3L | 28110227 | 3L | 15301518..15301840 | 1054..733 | 1080 | 95.1 | Minus |
| 3L | 28110227 | 3L | 15302500..15302612 | 190..78 | 565 | 100 | Minus |
| 3L | 28110227 | 3L | 15302670..15302740 | 79..9 | 355 | 100 | Minus |
| 3R | 32079331 | 3R | 10165299..10165402 | 668..564 | 190 | 81 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:25:24 has no hits.
UFO08496.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:46 Download gff for
UFO08496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best3-RA | 39..1104 | 1..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:31:20 Download gff for
UFO08496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best3-RA | 39..1104 | 1..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:59:48 Download gff for
UFO08496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best3-RA | 39..1104 | 1..1069 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:59:48 Download gff for
UFO08496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15301473..15301837 | 736..1104 | 92 | <- | Minus |
| 3L | 15301889..15302432 | 191..735 | 99 | <- | Minus |
| 3L | 15302500..15302610 | 80..190 | 100 | <- | Minus |
| 3L | 15302670..15302747 | 1..79 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:31:20 Download gff for
UFO08496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15294573..15294937 | 736..1104 | 92 | <- | Minus |
| arm_3L | 15294989..15295532 | 191..735 | 99 | <- | Minus |
| arm_3L | 15295600..15295710 | 80..190 | 100 | <- | Minus |
| arm_3L | 15295770..15295847 | 1..79 | 95 | | Minus |
