UFO08504.5prime Sequence
1095 bp (944 high quality bases) assembled on 2011-07-29
> UFO08504.5prime
CAGTCGACATGAATCGCCTGCTGCTGCAGTGTCTAGTGACCACCATTCTG
GTCTACAAAGTGATTTCGGTGCCGACCAGCACGATGAGCACCAGCATCCA
GACGACCTCGGAGATTCCGCAGCAGGATGACGACGACGACGACTGGGAGG
AGGACGACGACTCTCTGGAGTCTGACGACGATGGCCGCGTCTACAAGAAT
CCTCGCAACTCACCCTCCACCGAGTGTCCACGCGACGAGGAGCAGGCCAC
GCTGCTCGGCCAGAAGTGCTTGAGGAAGTGCTCCTCCGACGAGGATTGCA
AGAGCAAGAAGAAGAAGTGCCTGTGCGACGGCGTCTGTGGCAATTCCTGC
ATTAAACCAGATCGCGAGTGCCCGGAACTAGCCCAGCCCAGCTTGGGTCA
GGTCACAGTGGCTGGACGCCACTTCGGAGCTCGCGCCTCCTATGCCTGTC
CGCACGGCTACCACGTTGTGGGTCTCCAGAGTCGTCTGTGCCAGGCGGAC
GGAAATTGGGCCGGAGCCGAGCCAGCTTGCAAGCAGAATATTTACTGCCT
GAAGCCGCCGCAGATAGAGCATGCACGGAACTCGGCGCTGCCGGAACAGG
AAACCTTTGACCTGGACTCCACGGTTCAGTACCACTGTCACACCGGCTAC
GTGACCAATGGATTCCCGCGGGCCAAGTGCCTGGCTATTGATAACCTGGC
CAGCTGGTACGGCCCGGATATCCAATGCGAACCTCGATCCTGTGGCCAGC
CACCGGATCCGGCCTACGGATGGCATGCCGGCGAGTGCTACACGTACGGA
TGCAAGATCACCTACACTGCGGAACCGGATACGAGCTGGTGGGCAAGCCA
CGAGCGCTACTGCCAGTCGGACGGATCGTGACGCCCAAGGAGCTGCCCCA
CCTTGTGTCCTCGGATAGCGCAAATGTAACCACCACCCAGCGTTCGTTAT
CCGCAAGCTTTCTAGACACATTCGGTTGGCGCCGCGGGCCCAGTTAAGTG
GTCATAAATCATTATCATATCATATCATAATCACAACTAGCCTAGAGATC
CCTGGTCATGACTAGTGCCTGAATCCTCACATTAAAACGCCCGGG
UFO08504.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10186-RD | 1440 | CG10186-RD | 190..1131 | 9..952 | 4535 | 99.2 | Plus |
| CG10186-RH | 5429 | CG10186-RH | 190..1089 | 9..909 | 4390 | 99.4 | Plus |
| CG10186-RG | 5683 | CG10186-RG | 444..1343 | 9..909 | 4390 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:26:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19515734..19516035 | 360..59 | 1510 | 100 | Minus |
| 2L | 23513712 | 2L | 19515168..19515359 | 732..541 | 960 | 100 | Minus |
| 2L | 23513712 | 2L | 19515419..19515600 | 540..359 | 910 | 100 | Minus |
| 2L | 23513712 | 2L | 19514941..19515107 | 898..733 | 690 | 98.2 | Minus |
| 2L | 23513712 | 2L | 19516441..19516492 | 60..9 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:26:57 has no hits.
UFO08504.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:08 Download gff for
UFO08504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10186-RD | 209..1163 | 1..958 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:32:24 Download gff for
UFO08504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10186-RD | 182..1136 | 1..958 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:00:44 Download gff for
UFO08504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10186-RD | 182..1136 | 1..958 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:00:44 Download gff for
UFO08504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19514832..19514859 | 912..939 | 100 | <- | Minus |
| 2L | 19514931..19515107 | 733..911 | 96 | <- | Minus |
| 2L | 19515168..19515359 | 541..732 | 100 | <- | Minus |
| 2L | 19515419..19515598 | 361..540 | 100 | <- | Minus |
| 2L | 19515734..19516033 | 61..360 | 100 | <- | Minus |
| 2L | 19516441..19516498 | 1..60 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:32:24 Download gff for
UFO08504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19514832..19514859 | 912..939 | 100 | <- | Minus |
| arm_2L | 19514931..19515107 | 733..911 | 96 | <- | Minus |
| arm_2L | 19515168..19515359 | 541..732 | 100 | <- | Minus |
| arm_2L | 19515419..19515598 | 361..540 | 100 | <- | Minus |
| arm_2L | 19515734..19516033 | 61..360 | 100 | <- | Minus |
| arm_2L | 19516441..19516498 | 1..60 | 93 | | Minus |
