UFO08507.5prime Sequence
1097 bp (977 high quality bases) assembled on 2011-07-29
> UFO08507.5prime
CAGTCGACATGCGAATACGTGGAGTATTGGCCATGTATCTGATGTTCCTC
CGCCTGCTACTCCACTGCACCACCGGTCACACATTGCCTCAGCGACACAG
CCCCCAGCACAAGAGAATGATCGATCCCCGTGAGCTCTTAAACGATTTTG
CTGCAATCAAGGAACCAGGAACCAGCGAAGTTGCTCCAAAGAATTCTGCT
AGATCAATTGCTTTGTACAATGCTGGTGGAGCGATGTCAGGATCAGGAGA
AGGAACCGCACCGGGACCGGGAACAGATAATTCCAAGTCGGCCTCCAATA
AGCAATGCGATCCGCAGGCAAAGTGCAATGTAAAGACGATCATAACCCCC
GGAGATCCCAAGCAGAAATCCTCAATGATCGCAATGAAAGCTGCACAGGA
TGCAAAGGCGGCCAGTGAAGCACAATCGGCCGCTGGCCAGGCTGCTGCCC
AACACATTAAGATGGAACTCGCTGAGAAGGCCTTTCAATCGGCCAAGGCG
TCCGAGGCTGCTCTGATGGGCAAACAGATGATGGTCGATCAACTGGAGCA
GGAAGTCCAGGAAGCTAGTGCCGTTGTCGAGGAGGAGTCCAATTCGATCC
ACCACACGGAGGCCAATATGAATGCCGCCGTTGAAGCTGTCAAAGTGGCC
GTGCAGCAATTCGAAACCATCAATGAACTGCAGAAGACCGCCAGGGAGTC
ACTGACCAATATTCAGACGGTGGCCATGGGATCGCAACAGGAAATGGCCG
CCAAGACACAGCTCCTGGAAGCGGCTCGCAACCGGATGGCCATGCTCCAA
AAGCAACTGGTGAGTGCCCACGACGACTATGAGAAGACCAAGCAGGCCGC
CTACATGCTGCCTGTGCCGCCGTGAAGCCAAACAGAGGGCTGGACACCTG
TACCACGTTACTTATATTTTTGCAAGCTTTCTAGACCATTCGTTTGCGCG
CGGGCCCAGGTAGTGGTCATAATTCATATCATATCATAATCATAATCACA
CTAGCCTAGGAGATCTGTCATGACTAGTGCTTGATCCCCACCAATAAACG
CCCAGCGCAACGAGCGTCTGACCATTCAGATGGAATCTGAGTCATTA
UFO08507.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34459-RC | 1289 | CG34459-RC | 298..1213 | 8..921 | 4455 | 99.3 | Plus |
| CG34459-RB | 1096 | CG34459-RB | 105..1020 | 8..921 | 4455 | 99.3 | Plus |
| CG34459-RA | 1061 | CG34459-RA | 70..985 | 8..921 | 4455 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16825735..16826564 | 86..912 | 3970 | 99.4 | Plus |
| 2R | 25286936 | 2R | 16825599..16825677 | 8..86 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:27:27 has no hits.
UFO08507.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:15 Download gff for
UFO08507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34459-RA | 61..986 | 1..925 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:32:46 Download gff for
UFO08507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34459-RA | 61..986 | 1..925 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:00:59 Download gff for
UFO08507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34459-RA | 63..988 | 1..925 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:00:59 Download gff for
UFO08507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16825592..16825677 | 1..86 | 95 | -> | Plus |
| 2R | 16825736..16826564 | 87..912 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:32:46 Download gff for
UFO08507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12713097..12713182 | 1..86 | 95 | -> | Plus |
| arm_2R | 12713241..12714069 | 87..912 | 99 | == | Plus |
