UFO08513.5prime Sequence
1150 bp (1046 high quality bases) assembled on 2011-07-29
> UFO08513.5prime
CAGTCGACATGTTTGCCCATATGCTGGACTTCCTGAATCGATCGCCACCG
GATCCTGTGCGTCTTCCGTTGACCAGCAGCCACTGGCCGGTGTTGACCAT
CCTTGGAATCTATCTAGTCTTCATAAAAATAGTGGGTCCTTGGTTTATGC
AGAATCAAAAGCCCTACAATCTGGATAGAGCTATCAAGATCTACAACATC
GTGCAAATCGCATACAATGTCATTTTGTTAATATTTAGTGTGCACTTCAT
GCTTGGTCCTGGCAACTATAACTTCAGTTGCATATCCAATCTGCCGTTGG
ATCATGAGTACAAGAACTGGGAGCGTTGGCTCAGTTACTCCTACTTCTTC
AACAAGCTCATGGATCTGCTGGAGACTGTGTTCTTTATATTCAGAAAGAA
GTATCGCCAGATATCGTTCCTGCACGTTTTCCACCACGTATACATGGTGT
ACATAGGCTTCTTGTACATGTATTATTATGGATACGGCGGCCATGGATTC
TTCTTGATCACCTTCAACGTGGTGGTGCACACCATGATGTACACCTACTA
CTACCAGTCGTCCCTCAATCGGAACTCGGGTGGCGATCTCTGGTGGAAGA
AATACATCACAGTCGTTCAGCTTGTCCAATTTGTTATTATATTCTCGCAC
AGCGTCTATATCCTCCGGCAAACTGATTGTCAAACATCACGATTATCGGC
AACTTGGGGCTCACTGATATCTGTAGTATTTATAATTCTATTTAGTAACT
TCTACGTTCGCACCTACATTCTTCCCAAGAAAACGAAATCGGCGGTGGGC
CGAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGG
TCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGAT
CCTGGTCATGACTAGTGCTTGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGGAGGTCATTACTGG
ATCTATCACAGGAGTCCAGCGAGCTCGATATTCAAATTAACGCCCCCGCC
TGCCACTCATCGCAGGTACTGTGTAATTCATAGCATTCTGCGAACATGGA
AAGCCAATCCCAAACCGGCATGATGACTGGATCGCCAGCGCACTCAGTCA
UFO08513.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9459-RA | 901 | CG9459-RA | 26..824 | 5..803 | 3995 | 100 | Plus |
| CG9458-RA | 900 | CG9458-RA | 194..635 | 192..633 | 845 | 79.4 | Plus |
| CG8534-RA | 990 | CG8534-RA | 326..484 | 279..437 | 360 | 81.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9817505..9818071 | 803..237 | 2835 | 100 | Minus |
| 3R | 32079331 | 3R | 9818139..9818370 | 236..5 | 1160 | 100 | Minus |
| 3R | 32079331 | 3R | 9819179..9819573 | 633..239 | 790 | 80 | Minus |
| 3R | 32079331 | 3R | 9813275..9813433 | 279..437 | 360 | 81.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:27:09 has no hits.
UFO08513.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:11 Download gff for
UFO08513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9459-RA | 22..829 | 1..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:32:32 Download gff for
UFO08513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9459-RA | 22..829 | 1..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:00:49 Download gff for
UFO08513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9459-RA | 22..829 | 1..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:00:49 Download gff for
UFO08513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9818139..9818371 | 1..236 | 98 | | Minus |
| 3R | 9817500..9818071 | 237..809 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:32:32 Download gff for
UFO08513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5643861..5644093 | 1..236 | 98 | | Minus |
| arm_3R | 5643222..5643793 | 237..809 | 99 | <- | Minus |
