UFO08515.5prime Sequence
1070 bp (949 high quality bases) assembled on 2011-07-29
> UFO08515.5prime
CAGTCGACATGGAATCCATGGAGGTTGATGAGTCTGCTGCCCAGCTCTAC
GTTCGCACGCCGGAGGATGTGAAGGCCATTGTGAAGCATGCGAAACTGGA
CGAGCGCCAGTTGACCCAACTCACCCAGGCTCTGTACTTTCCCTCGGCGG
ACGTGGATTCGGACAATCTGCGCCTTCTGGAGCTCGATGGGCACATGCTT
GGACAAATCCGCGACGGCCAGACGCTATATTTCAAGGGTGGCCAGAACGA
GAAGCTGGTGCTGTGCACCGATGAGCGAACGTACGACGTGAAGGGCGCGG
AAATATCCAATAGCCTTTTGCTGGTACCGGACCTCAAGTTTGCCGCCGCC
ACCAGCACCTCGCCGCTGAAGAGTCCGCGCACTGGCAACGCCAACGCCTC
CCTGGAGCGCAGCCTCAATGACAGCACGGAGGATGAACTGGAAGTGCCGC
GAACTCTGGAGCAGCGGCCGGTGCTCAAGGTGTTCCACGAGTACTTCGAG
TGCCGCGAGATAAAGCCGCGCTTTCGCAAGCTGGGTGAACTACTGCAGCT
GACTCGATATTCGGGGCCGGAGAACGAGTTCTGCGTGGAGCAGAAGCTAC
TCTTTACCTTTTCGCAGCTCCTGGACACGGTGCAGTGCAGCCGCGGTCAG
TTCATGGAGGGATTGAACCAATATCGAGCCATAGAACTGGACGGGCGAAT
GCGCGTGATGGAGTACGAATACGAGTATCGCATTATTAACATGATGCTGG
GTTTGATAAGCGAAAACTCCTGGGCCTTGGACGAAGTGGAACGGGAGGAG
ACCATCAATGCACTGAAAGGCATAGCTCCAGAGGATGTTGTGGCTGGGCT
GTTTGATATCTATACCATTCCCAGTGAACGTTGCCCGGGCAAGTTTGAGT
ACCAGGAGTCCTTGGTCTCCGCAATTGTGCCAGAACCATTCTTCAGCGGG
CTTTGCCGCTTTCGCAACGAGGAGTCATGCGAACTGCAAGAGTACTGCCG
AGCATGTTCTGCTACTTAAGTACCTACAGTCTGCATTTGCGACAGAAGGA
CGCAAGCTGCCAACCTCCTT
UFO08515.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11788-RA | 1429 | CG11788-RA | 93..1142 | 7..1044 | 4730 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20274788..20275716 | 47..975 | 4415 | 98.8 | Plus |
| 2R | 25286936 | 2R | 20274689..20274728 | 7..46 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:27:30 has no hits.
UFO08515.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:16 Download gff for
UFO08515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11788-RA | 1..972 | 5..975 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:32:48 Download gff for
UFO08515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11788-RA | 87..1061 | 1..975 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:01:01 Download gff for
UFO08515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11788-RA | 87..1061 | 1..975 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:01:01 Download gff for
UFO08515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20274683..20274728 | 1..46 | 95 | -> | Plus |
| 2R | 20274788..20275716 | 47..975 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:32:48 Download gff for
UFO08515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16162188..16162233 | 1..46 | 95 | -> | Plus |
| arm_2R | 16162293..16163221 | 47..975 | 99 | == | Plus |
