UFO08517.5prime Sequence
1148 bp (1028 high quality bases) assembled on 2011-07-29
> UFO08517.5prime
CAGTCGACATGGGAATAATTTGCCAAATTCTTTTTCACAACAACACGCAA
GGGGTTTTTTACGCGGGCCAAATGGTTGCTGGTCAAGTGACTCTGAGCAC
TGATAAGGCGATTCAAATCAAAGAAATGGCTTTGGAGCCGGGAACTAGGT
CCTACAATTTTGCTTGTCCAATTCCAATCAATTGTCCCTCATCGTTCGAG
GGGACTCATGGTCGTATACGTTATATGGTGGATGTCAATATCATTCAGCC
GTGGAAGTACGACAGCATTTTCTCAAGAGCTTTCACCGTTATTCAAGTGA
TGGACATAAACACCTATAACTCTGTTTCACAGGTTCCCGTGCAGGCCAAG
ACTGAGAAAACCTTTGGGGTCTGGCCCTTCCGATCGGATCCTCTAACGCT
GGAGCTGAATTTGCCGCAGACTGGCTTTGTGCCTGGTCAGACGGTACCCG
CAAATGTTCTGATTGGTAACGAAAGCAAAATTCGGGTGCACGAAGTGAAG
GTTGGACTATCAATGATGATCACCTACTACAGTGATCTAAGTTCAGGTTC
CAAGTGCGAGCGCAAGTCCGTGGCCAAGTTAAAGGCAGATGGAGTTTTGA
GGAACTCCCGGAAAATGTACGACTTCCAACTGATGATACCCTCTACTCCG
CCTTCATGTTTCCATCTGTGCCGCATTATCAAGATCGGATACCAGATCGA
GGTTGTGGCCAAGGTGAAGGGCATGCATATCAATGGAACTCTGATAATGC
CGGTGACTATTTGTGGTGTTCCGATATCGCCGTCAGCGGTGCAATATACG
CCGCAGAGCTCTGGGCCAGAGGCTCCAGAACAAAGAGCTTTGACTTTGAT
TGAGGGAGAGGGAGCTTTTGCTCCAGCTGCTCCCCATATCCCTGGTCAGA
AGATCCACACTATCGCCACCGACTACGCCGAGGCCATGCATTCCCATAGT
GACTCTGAGAACAGTCAGAGTCGGAAATGCCGCAGAGAGTCTTACAGCCG
TTGTATCCTGTTCTTCGATTTGTCTACTCAACTGTAAGAAAGAGCAGAGC
GGCTTTGATAAGAGAAAAGAAGCAAGCTTCTGAACATCGTTTGGCCCGCG
CCAGTTAATTGCTAATCTAATCTAACTAATCTAATCCCACTAGCCTTA
UFO08517.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18748-RB | 1359 | CG18748-RB | 80..1156 | 8..1071 | 4950 | 98.2 | Plus |
| CG18748-RC | 1509 | CG18748-RC | 345..1306 | 123..1071 | 4375 | 98 | Plus |
| CG18748-RC | 1509 | CG18748-RC | 80..199 | 8..127 | 585 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7786601..7787185 | 913..331 | 2825 | 99.7 | Minus |
| 3R | 32079331 | 3R | 7787242..7787457 | 334..119 | 1080 | 100 | Minus |
| 3R | 32079331 | 3R | 7787729..7787844 | 123..8 | 580 | 100 | Minus |
| 3R | 32079331 | 3R | 7786404..7786532 | 1046..922 | 275 | 91.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:27:33 has no hits.
UFO08517.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:16 Download gff for
UFO08517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18748-RB | 80..1127 | 8..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:32:51 Download gff for
UFO08517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18748-RB | 80..1127 | 8..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:01:02 Download gff for
UFO08517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18748-RB | 80..1127 | 8..1049 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:01:02 Download gff for
UFO08517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7786601..7787183 | 333..913 | 99 | <- | Minus |
| 3R | 7787244..7787452 | 124..332 | 100 | <- | Minus |
| 3R | 7787729..7787844 | 8..123 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:32:51 Download gff for
UFO08517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3612323..3612905 | 333..913 | 99 | <- | Minus |
| arm_3R | 3612966..3613174 | 124..332 | 100 | <- | Minus |
| arm_3R | 3613451..3613566 | 8..123 | 100 | | Minus |
