UFO08518.5prime Sequence
1099 bp (988 high quality bases) assembled on 2011-07-29
> UFO08518.5prime
CAGTCGACATGCCAACATTAAAGGACGTTGAGGAGGCCATTAGAGGATTG
AGACTCATTCAGTGGACTTATTCACTGCCAACTGCCGAAATGGCCAAGGG
AGTTCTTCAGGACATCCATCACAATACATCGCTGGATGGAATGCAGTGTA
TTACGATTGCCAGGCACATGGTAAATTATAAGGACTTTATTCGTGCCAAG
GAGTGGTTGATGGTAGGTTTAAAGATGTACGAGGCAGATGAAGAAATCGA
GTATATCTATTCCCAACTCGGAATGCCCTTGGTCGATTTTTACGAGCTTT
TCGTCGAGATTCAAGATGAACTTGGTTCTCGATACTTGGCCATGAGTGAA
CTGCAACTCGCTATTAAGAATTGGCCGGAAAAGGTCAGTCTGCAAAGAGC
CCTTTCTCGGCTAAAGATGAATATTCGCATTGGCAAGGAGCCAGCGGAAA
AGAAGAATAAGTCCAAAAGAGTCTATAAGAAATGCTGCAGTTCGGAATGT
CGACCTACCGCGAAACTTTATTGCTTGTACAAAACGACATCCTCGTATTT
CCTTCGATTGGCCCCTCTGAAGATGGAACTGCTGTCCCTCGATCCCTACA
TGGTGCTCTTTCATGATGTAGTTTCTGACAAGGACATTGTCAGCATTAGG
AACCTGACTAAGGGCAAACTTGCCCGAACCGTTACCGTGAGTAAGGACGG
AAATTATACAGAGGACCCCGATCGCACCACCAAAGGGTACATGGCTAGTT
GAGAATAACGCATTGATCCAGAGATTATCGCAACTGACACAGGATATGAC
TAATTTCGACATCCACGACGCGGACCCCTTTCAGGTTTTGAACTACGGAA
TAGGCGGTTTCTACGGCATCCACTTTGACTTTTAGAGGATGCAGAATTGG
ACACTTTTCGGATCGCATCGCCACTGCCGTGTTTTATTTGAGTGACGTGC
CCAAGTGGGGCCACCATATTCCCGAATCTCGACTCTCCGTGTTCCCCAAA
AGGCTCAGCACTTCTGTGTACAATCTGATCACAAGCGATGTGAAAAATAG
AACAGCCACTCAGCTTGTCCAAGTGTGTGGGTCTAGATGGTCATGACAT
UFO08518.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15539-RB | 1565 | CG15539-RB | 372..1474 | 9..1097 | 5020 | 97.9 | Plus |
| CG15539-RA | 1615 | CG15539-RA | 422..1524 | 9..1097 | 5020 | 97.9 | Plus |
| CG15539-RC | 1562 | CG15539-RC | 372..1471 | 9..1097 | 4965 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30507064..30507509 | 451..896 | 2135 | 99.6 | Plus |
| 3R | 32079331 | 3R | 30506629..30506830 | 125..326 | 1010 | 100 | Plus |
| 3R | 32079331 | 3R | 30506887..30507015 | 324..452 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 30506460..30506575 | 9..124 | 580 | 100 | Plus |
| 3R | 32079331 | 3R | 30507659..30507801 | 938..1070 | 230 | 88.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:27:37 has no hits.
UFO08518.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:17 Download gff for
UFO08518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15539-RB | 366..1474 | 1..1099 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:32:54 Download gff for
UFO08518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15539-RA | 416..1524 | 1..1099 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:01:04 Download gff for
UFO08518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15539-RA | 416..1524 | 1..1099 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:01:04 Download gff for
UFO08518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30506454..30506575 | 1..124 | 96 | -> | Plus |
| 3R | 30506629..30506828 | 125..324 | 100 | -> | Plus |
| 3R | 30506888..30507015 | 325..452 | 100 | -> | Plus |
| 3R | 30507066..30507509 | 453..896 | 99 | -> | Plus |
| 3R | 30507562..30507603 | 897..937 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:32:54 Download gff for
UFO08518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26332176..26332297 | 1..124 | 96 | -> | Plus |
| arm_3R | 26332351..26332550 | 125..324 | 100 | -> | Plus |
| arm_3R | 26332610..26332737 | 325..452 | 100 | -> | Plus |
| arm_3R | 26332788..26333231 | 453..896 | 99 | -> | Plus |
| arm_3R | 26333284..26333325 | 897..937 | 97 | -> | Plus |
