UFO08519.5prime Sequence
1125 bp (1039 high quality bases) assembled on 2011-07-29
> UFO08519.5prime
CAGTCGACATGGAGACAACTAAAGTGAAGGAGCCGGATCAGAGTGGGGAC
TCCATCCACAAGAAACGTGATGCCATCTGGCCACTGGTTCTCTTCTATAT
CCACTTAAATATCCTCGGTGTCTATGGGATTTACGTTCTGCTCACTAGCG
CGTCGTGGGCCACGATTTTATTCACCGCCCTGCTCACCCTCCTTGGCACT
TTGGGCGTGACAGTGGGCGTTCATCGTTTGTGGGCGCACAGGACCTTCAC
CGCCTCCAAGCCCCTGAAGGTTTTCCTCATGTTCTGCCAGACGACCGCCG
GTCAGGGCTCCATCTACAGTGTGGTTCAGGCCCATCGCCTCCATCATGCC
AAGTTCCAGCAGGACGAGGATCCCTACTACAGTAAACACAGCTTCATGTA
CGCCCAGGTGCGCGGCGGTCTTCTGAAGTACTCGCCACAGCAGGAGGAAC
TGCTCAAGGATGTGGATATGTCGGACCTGGAAAGTGATCCTGTGGTCATG
TTTCAGAAGAGATTCTATGTCCTGCTGTACATCTTCCTAAACGTACTGCT
ATCGGTGAACACTCCGTTCCAGTACTTTGGGGACTCCCTAGCCACCTCCA
TGTTCGTGGGTTTCTGGCTGCGCAGTCTGATCGTTATCAACCTAGGAAAC
CTGGTTCACTCATCCCACTTTATTTGGAGCATTCACAAGGGCTTTAAGCC
CACCGATTCCAACAGTATCTTCCTGATCACAAAGAGTTACTGGCCGCAGT
ACCACTATCTGCTGCCCAGGGACTACCAGAGTGGGGAGTACGGCAACTAT
GCCTCTGGCATTGGGTCTTCCATGATCCGCGTGTTCGCCGCCCTCGACTG
GCCAAGGATCTGAAGACCATTGGATCCGTGGCCGTTCGCCAGGGACTGAC
CAGCGGTGAGACTGTCGTCCGATCGTCGAGTGCATCGAGGACCAGTGAGC
TGGAGAAACGCCCTGCCCGCAACCATTCCTCAACGGGAGAAGTTATGGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAGTGTCATATCT
AATCATATCATATTCAAATCACACTAGCTAGGAGATCCTGTCATGACTAT
GCTGAATTCTCACATAAAAGCCTGG
UFO08519.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15531-RA | 1158 | CG15531-RA | 61..1058 | 9..994 | 4695 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30194950..30195386 | 941..510 | 1970 | 98.9 | Minus |
| 3R | 32079331 | 3R | 30195447..30195656 | 511..302 | 1050 | 100 | Minus |
| 3R | 32079331 | 3R | 30196003..30196168 | 174..9 | 830 | 100 | Minus |
| 3R | 32079331 | 3R | 30195779..30195910 | 306..175 | 660 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 17:27:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1997..2062 | 579..514 | 114 | 63.6 | Minus |
UFO08519.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:18 Download gff for
UFO08519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15531-RA | 53..1067 | 1..1003 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:32:57 Download gff for
UFO08519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15531-RA | 53..1067 | 1..1003 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:01:06 Download gff for
UFO08519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15531-RA | 53..1067 | 1..1003 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:01:06 Download gff for
UFO08519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30194934..30195384 | 512..955 | 98 | <- | Minus |
| 3R | 30195447..30195652 | 306..511 | 100 | <- | Minus |
| 3R | 30195780..30195910 | 175..305 | 100 | <- | Minus |
| 3R | 30196003..30196172 | 1..174 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:32:57 Download gff for
UFO08519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26020656..26021106 | 512..955 | 98 | <- | Minus |
| arm_3R | 26021169..26021374 | 306..511 | 100 | <- | Minus |
| arm_3R | 26021502..26021632 | 175..305 | 100 | <- | Minus |
| arm_3R | 26021725..26021894 | 1..174 | 97 | | Minus |
