UFO08520.5prime Sequence
1106 bp (988 high quality bases) assembled on 2011-07-29
> UFO08520.5prime
CAGTCGACATGGTCAAGCAAGTGGATTTTGCGGAGGTGAAGCTCAGTGAG
AAATTTCTCGGAGCTGGATCTGGTGGAGCGGTGCGCAAAGCCACCTTTCA
AAATCAGGAGATTGCAGTAAAGATATTTGATTTCCTTGAGGAAACAATCA
AAAAGAATGCAGAGAGGGAAATCACACATTTGTCGGAGATCGACCACGAA
AACGTTATCAGGGTGATCGGGAGGGCCAGCAATGGAAAGAAGGACTACTT
GTTGATGGAGTACCTGGAGGAGGGGTCCCTCCACAACTACCTCTATGGCG
ATGACAAGTGGGAGTACACCGTGGAGCAAGCGGTTCGCTGGGCACTCCAA
TGCGCCAAGGCCTTAGCATACTTGCATTCGTTGGATCGACCGATTGTTCA
CCGCGATATTAAGCCGCAAAACATGCTTTTATATAATCAGCATGAAGACT
TAAAGATTTGTGACTTTGGCCTGGCGACGGATATGTCCAATAATAAGACC
GATATGCAAGGAACATTGAGGTATATGGCTCCCGAGGCCATTAAGCACTT
AAAGTATACGGCTAAGTGTGATGTGTACAGCTTTGGAATAATGCTCTGGG
AGCTGATGACACGTCAATTGCCATATAGTCACTTGGAAAACCCCAACAGC
CAGTACGCCATTATGAAAGCTATCAGTTCAGGCGAAAAACTTCCAATGGA
AGCAGTAAGATCCGATTGCCCAGAGGGTATCAAGCAATTAATGGAAATGT
TGCATGGATATAAATCCCGAAAAGCGCCCCTCTATGAAAGGAGATCGAAA
AGTTCCTTGGCGAACAGTATGAATCCCGGCACTGACGAGGACTTTATCAA
GCCTTTGGATGAGATACCGTGGCCTGTGTGACCTACCATGTGGATTCGTC
CGGCAGCAAGAATATGCGTGTGATTTCTGGCGACATCAGTTGCCATCGAT
CCGCATGACTTTTCCGATAGTGAACGGGAGCTGAAGATTGGAAGACGTTG
TCAGAAATTGCCAAGCGGCGCGATGAGATCGGAGTCGCGGCTGAAAGGAA
CCGGACTGTAACCTCGAGGGCTGCCAATGTAAGCCGTAACCGGAGAGCGG
TTCAGA
UFO08520.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Takl1-RA | 1323 | CG31421-RA | 34..1119 | 9..1075 | 4685 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20771786..20772110 | 682..358 | 1625 | 100 | Minus |
3R | 32079331 | 3R | 20772161..20772472 | 360..49 | 1560 | 100 | Minus |
3R | 32079331 | 3R | 20771153..20771446 | 974..680 | 1130 | 96 | Minus |
3R | 32079331 | 3R | 20772527..20772568 | 50..9 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:27:44 has no hits.
UFO08520.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:19 Download gff for
UFO08520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Takl1-RA | 28..998 | 1..974 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:32:59 Download gff for
UFO08520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Takl1-RA | 28..998 | 1..974 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:01:08 Download gff for
UFO08520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Takl1-RA | 28..998 | 1..974 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:01:08 Download gff for
UFO08520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20771787..20772108 | 360..681 | 100 | <- | Minus |
3R | 20772162..20772470 | 51..359 | 100 | <- | Minus |
3R | 20772527..20772574 | 1..50 | 92 | | Minus |
3R | 20771153..20771444 | 682..974 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:32:59 Download gff for
UFO08520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16596875..16597166 | 682..974 | 96 | <- | Minus |
arm_3R | 16597509..16597830 | 360..681 | 100 | <- | Minus |
arm_3R | 16597884..16598192 | 51..359 | 100 | <- | Minus |
arm_3R | 16598249..16598296 | 1..50 | 92 | | Minus |