UFO08523.5prime Sequence
1137 bp (1040 high quality bases) assembled on 2011-07-29
> UFO08523.5prime
CAGTCGACATGATAACGAGGCTCTACAACACCGAAGAGGATCCCGCCTAC
TGCTCGTTCATCTGGGGCTCGAATCTCACCAGCAGCGTCGACGTCCTGGC
TGCCAATGCCACGTCCGTCTTCAGCAGCGACCTGAGGGACGACTTCTATC
GGGATGTGGAGGATCCGCGGACGGAATCGCTGAGGGAATACTGCTATGGC
CTGGTGCTGCCCATCATCTGCGCCATGGGCATCATAGGCAACGTGCTCAA
CCTGGTTGTGCTCACCAGGCGCAACATGCGTGGCACCGCCTACATTTACA
TGCGGGCTTACTCCACCGCCGCCCTGCTGGCCATCGTGTTCGCCATTCCC
TTCGGTATCCGCATGCTGGTCCACAAGGATCGAGGACAGTGGGAGGAGTT
CGGCCCAGCCTTCTACACCGCCCACCTGGAGCTTTATCTGGGCAACGGCT
GTTTGGGCGTTGGCGTAATGATGTTACTAGTGCTGACCATTGAACGTTAC
GTGTCCGTTTGCCATCCAGGATTTGCTCGACCAGTGATGGGACCACCTGG
CGTTGTGGTATTCCTCACCTGCTTGGCCACGGTAATCGTCTATCTACCGA
GCATCTTTCGTGGCGAACTGATCAAATGCATCCTTGGATCGAGTGACGTA
TATGTATATTTGCGACGCGACAACACTATCTACCAGCAGACCATCTTCTA
TCGCGTCTACAAGATCATGCTGGAGGTGATCTTTAAACTGGTGCCCACTT
TGGTGATCGGTGGCCTCAACATGCGCATCATGATGGTCTACAGGCGGACC
TGTGAGCGCCGCCGCAAGATGGTGCTCAGTCGTCCGCATGCCCAGGGACA
TGGTCACGGACATGGGCACGGACATGGTCATGGAACATGGACATGCACAT
GGACACGCTATTTGAAGGACGACGATCCGCGAAAGTTCGCGAGGAGCGGC
GCTTGTTCCTGCTGCTCGGCAGCACATCGATTTTGTTCCTGGTCTGCGTC
TCGCGATGGCCATCTCACATGACGATCGCCTCGAGTCTATCGAGCCTTCC
CCTTCAAGGTGTCCGTGCAAGCGCCATCTTGCTTGAATGGAATTAACCTA
CCTCGCCTGACCTTCTAACATCTACCTGCGTTCAGCA
UFO08523.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33639-RD | 4684 | CG33639-RD | 1167..2285 | 9..1125 | 5095 | 97.9 | Plus |
| CG33639-RC | 4799 | CG33639-RC | 1170..2288 | 9..1125 | 5095 | 97.9 | Plus |
| CG33639-RB | 2526 | CG33639-RB | 1047..2165 | 9..1125 | 5095 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18213367..18213905 | 1076..545 | 2155 | 96.3 | Minus |
| X | 23542271 | X | 18218453..18218607 | 306..152 | 775 | 100 | Minus |
| X | 23542271 | X | 18214465..18214616 | 457..306 | 760 | 100 | Minus |
| X | 23542271 | X | 18219890..18220034 | 153..9 | 725 | 100 | Minus |
| X | 23542271 | X | 18213951..18214045 | 550..456 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:27:03 has no hits.
UFO08523.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:09 Download gff for
UFO08523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33639-RC | 1160..2251 | 1..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:32:29 Download gff for
UFO08523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33639-RB | 1037..2128 | 1..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:00:46 Download gff for
UFO08523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33639-RB | 1037..2128 | 1..1083 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:00:46 Download gff for
UFO08523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18218453..18218606 | 153..306 | 100 | <- | Minus |
| X | 18219891..18220044 | 1..152 | 97 | | Minus |
| X | 18213413..18213899 | 551..1033 | 98 | <- | Minus |
| X | 18213951..18214044 | 457..550 | 100 | <- | Minus |
| X | 18214466..18214615 | 307..456 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:32:29 Download gff for
UFO08523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18112486..18112639 | 153..306 | 100 | <- | Minus |
| arm_X | 18113924..18114077 | 1..152 | 97 | | Minus |
| arm_X | 18107446..18107932 | 551..1033 | 98 | <- | Minus |
| arm_X | 18107984..18108077 | 457..550 | 100 | <- | Minus |
| arm_X | 18108499..18108648 | 307..456 | 100 | <- | Minus |
