UFO08524.5prime Sequence
1151 bp (1042 high quality bases) assembled on 2011-07-29
> UFO08524.5prime
CAGTCGACATGCGGTTCTATATAACGACCCATTTGCCGGCCATCCTGCTC
GCTTTGATCTGCCTGGGGACACGCCCCCCACCCATCGGGGCGGTTAGGGG
CGGATCACCTGTTGTGGTCATCGATGAGGATGACGAAACCATGGAGTACG
CCCCGCATTATGAGCATCAGGGCTACGCCTTCAGCTACGGAGTCAAGGAT
CTGCACACTGGGGATGTGAAATCCCAGTGGGAGTCCCGCGATGGCGATGG
GGTCAAGGGTCACTACAGCGTACTGGAACCAGACGGCTCCATACGAACGG
TTCACTACACAGCAGACGCCAAGAAGGGATTCAATGCGATTGTCAAGACA
GTGGGCGCTAATTCGCATCCAATCACAGAGAGCCCGGAGGGCAGTAACCA
AGTGAACGATGATACCTCACAGTCAAAGATCAACCACTACAGCAAGGATC
AGGAGCACATTGTGCTCAGTTCGGACATCAAGCCTCTGAAGAGGCCCATC
GAGGACTTGACTCACTCCCATCCGAAGGTGCCCAGCTTGATTGAGATCAA
GCCGCACGCCAGGATCAAGCAGGTACCCATGGACATGGATCCCGGTATCA
GGGACCGTCTGCAGCAGGCCAGGGATACTTACTACAAGCAAATAGCCGCT
GCCCATAAACTAGAGGACTACTCCCAGAAACTTCAGCCCACCTACGCAGT
GCAGGAGGGCGATTGGAAGGCGGTGATCGTGAATGAGCCCAAAGAGTACC
GACCCCATTACACCACCGGATCCCCGGCGCACTCCCACTTCTACGACCAC
TACAAGCCCAAGGAGATCCCCCACAACTACATACACAAGCCGTCGGTTCC
ACAGCAATCGCTGCACACTAGTTTCTCCCCCTCAAAGCCCAGGATTAACA
TCCCCGAGAGCATTTCCAACCACATTCACCAGAAAAGTGTTCACACCACG
CCTGGCTTGAGCACTACAGTACAAGGCGTGTCCAGTCCTACTCCCGACCG
ATTACTCCAGCTACTCCACGGTAAGCCAAGAAGCTGGCGTCCCAGCATCC
CAAGCAGAAGCCCACGTGCCACGACTGAGATTCGTCAGCTTTCTTTCAGA
GCTAAGATACAGATTGAGACTTCAGAGGACGAACCAGGAAACGGCGCTCT
C
UFO08524.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr76Bc-RD | 1838 | CG9295-RD | 432..1506 | 5..1070 | 5030 | 98.6 | Plus |
| Cpr76Bc-RC | 1516 | CG9295-RC | 110..1184 | 5..1070 | 5030 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19526023..19526933 | 162..1062 | 3990 | 97.9 | Plus |
| 3L | 28110227 | 3L | 19523237..19523378 | 21..162 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:27:06 has no hits.
UFO08524.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:10 Download gff for
UFO08524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr76Bc-RC | 106..1190 | 1..1078 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:32:30 Download gff for
UFO08524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr76Bc-RC | 106..1190 | 1..1078 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:00:48 Download gff for
UFO08524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr76Bc-RC | 106..1190 | 1..1078 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:00:48 Download gff for
UFO08524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19523237..19523377 | 21..161 | 100 | -> | Plus |
| 3L | 19526023..19526933 | 162..1062 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:32:30 Download gff for
UFO08524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19516337..19516477 | 21..161 | 100 | -> | Plus |
| arm_3L | 19519123..19520033 | 162..1062 | 98 | == | Plus |
