UFO08528.5prime Sequence
1141 bp (1033 high quality bases) assembled on 2011-07-29
> UFO08528.5prime
CAGTCGACATGGCCAAGCCCCACTCGGATGCGGATGCCTCTGGCCTGGGC
TACGCCTACCAGCTGCCGTCCGGCGGCCTCCTGCTGCGCCTCAAATCTTC
CCTCTCACAGTTCAGCGATTTGTTCAGCGACTTCAGCAGGTACATCTCGC
CCGCCTATCATCACGATCGCTGCGAGCGATCCGTCCATATGCGACTCTAC
TCGATGCACAAGCGCGAGTTTGTCATGGTCTTCCTGGGATTCTTCACCTG
CTTCGGTCTGGGCATAGTCATCGGGCTGACGGGACCGCCCATAACCAGCA
CATCATCGCTGACCGCCCAGCAGATTCTGGCGAACACCTCGCTGGCGCAT
AGCCCAACGGTCCTGGGGAAGGGACCCTTCGCCATGAAGTCGCCGCTGAC
CACCACATATTCGCAGCAAATGTGGCTGATAGCCAAGCTGGTGACGGACA
ACAATGATGACGAGCGGTACGACAAGAGTTTCCAAGTGAGCGTCTCAATC
GATGGCATAAACGAGCAGCACAAGCCCCAAAGTGTCCTCGGATCCGGAGT
GGCTCACAACCGGACGCGGCACTTGGTCTGCGTACGGAACGACTGCGAGG
AGTTCACGGTGATGCATCTGGGATTCCTCGACTATGCCCACTATATTATC
ACTGTGCGCTTTTACGGCTTGGAGTCATTCCATCAGAAGTATAATATACG
CAGCATAACATTTTACTTCAAGACTTACAGTCCGGACTTCACGCAGATTG
AAATCTGGTTTACGTGCATCTTTCTGCTGTTCACCTTCATTGTCATATGC
TGGTATGCCCACACCTTGCGCAAGTATCCAATCTATGATTGGTCCATTGA
GCAGCGATGGTTGTCGGTACTCCTGCCCCTGCTCCTTTTGTACGACAGTA
GTGTTTCACCCGGATTAGTGCAAGCTTTCTAGACCATTCGTTTGGCGCGC
GGGCCCAGGTAAGTGGTCATAATCATTATCATAATCATAATCATATCCAC
ACTAGGCCTAGAGATCCTGTCATGACTAGTGCTTGATTCTCACCATAAAA
ACGCCCGGCGGCCACCGGAGGCGTTCTGAACAATCGGATGGAGTTCTTGA
AGTCATTACTGGGAATCATCACGATTCAAGCGACTGATTCA
UFO08528.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13409-RA | 2087 | CG13409-RA | 177..1066 | 8..897 | 4435 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22031273..22031724 | 459..8 | 2260 | 100 | Minus |
| 3R | 32079331 | 3R | 22030950..22031207 | 716..459 | 1290 | 100 | Minus |
| 3R | 32079331 | 3R | 22030618..22030740 | 919..798 | 565 | 99.2 | Minus |
| 3R | 32079331 | 3R | 22030816..22030896 | 797..717 | 390 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:27:50 has no hits.
UFO08528.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:20 Download gff for
UFO08528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13409-RB | 180..1103 | 1..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:33:04 Download gff for
UFO08528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13409-RA | 170..1066 | 1..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:01:12 Download gff for
UFO08528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13409-RA | 170..1066 | 1..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:01:12 Download gff for
UFO08528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22030950..22031206 | 460..716 | 100 | <- | Minus |
| 3R | 22030618..22030740 | 798..919 | 99 | <- | Minus |
| 3R | 22030816..22030896 | 717..797 | 98 | <- | Minus |
| 3R | 22031273..22031731 | 1..459 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:33:04 Download gff for
UFO08528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17856340..17856462 | 798..919 | 99 | <- | Minus |
| arm_3R | 17856538..17856618 | 717..797 | 98 | <- | Minus |
| arm_3R | 17856672..17856928 | 460..716 | 100 | <- | Minus |
| arm_3R | 17856995..17857453 | 1..459 | 99 | | Minus |
