UFO08529.5prime Sequence
1135 bp (1025 high quality bases) assembled on 2011-07-29
> UFO08529.5prime
CAGTCGACATGTTGATCGTACTACTGAGTGCTCTTGTGGCACCGTCAATT
GTCAGTGCCGCATGTGGCCAGTGTGTGGATGCGCACAGTTGCATCGGTGA
ATCGGAGTTTCAGTTGTGCTACGATGGTGTCCGGGACCAGACTATCAACT
ACACTTGCCCCGAATCAAAACCCATTTGCACAACCTACGGAATTATTTGC
ATGCCCAACGGCACGAGTATAGAACGCGGCTGTGGTGATGTCTCCAATTG
TGGTGTTTGCTCAGAATCCACAACTTTTGCCTGTACTTCAAGGACCACAT
TTGCTGTTTGCAACGGTGATGTTGTTTCCGCCAATAGTTTCGACTGTGCA
GAAGACTTTGTCTGCAGTGTTAAAAATGCAGCCAGCGGAAGTCCTTGTAT
TTCCCGGTGTGACTCATCAGACTCAGATATTTGTGATCGAGTTTTGGAAC
CCGAAGTGGAAAGCACCACGGCATCAGTGACTCCCACTGTCACATCCACA
GTCACTCCCATTGAGACTACTGCAGACCCATCCACAGTCATCACTGATTC
ATCGACAGGATCAACTGGGGATACCTCCACTGGATCGTCTTCCGTAACTT
CGTCGGACACATCAACGGACAGCACCGTGACTGTCACTGATTCAGGAAGC
ACTACCCAAAGTACTGCAACAACTCCAGCATTCAATGAAGACACCTATTG
CCAAGAGATCAACTCAACGGGTCGCTATCCCATACCCAATGACACAGTGT
GCACTAGCTACATCTACTGTGTTCTAAGGAGTGGAAGCTGGGCAGGATTG
CTCTATAATTGCAACGTGCAGAGACCTTATTTCGATGCTGATGTCTTCAG
CTGTGGTACTGTGAAGCCATCTTATGCCGGATGCACTAATTTAGTCGCAA
GCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGTCATATCA
TATCATATCATATCATATCACACTAGCCTAGAGATCTGTCATGACTAGTG
CTGATCTCACCATAAACGCCGCGCACGAGCGTTCTGAACAATTCGATGGA
GTTCTTGAGTCATACTGATCATCACGAATTCAGCGACTCGGATTCAATAG
CCGCCTTGCAACTATGCGAAATCCGTGAATCATAA
UFO08529.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34426-RA | 1022 | CG34426-RA | 9..897 | 8..896 | 4445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8802639..8803270 | 126..757 | 3160 | 100 | Plus |
| 3L | 28110227 | 3L | 8803334..8803474 | 756..896 | 705 | 100 | Plus |
| 3L | 28110227 | 3L | 8802471..8802591 | 8..128 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:27:15 has no hits.
UFO08529.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:12 Download gff for
UFO08529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34426-RA | 2..900 | 1..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:32:38 Download gff for
UFO08529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34426-RA | 2..900 | 1..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:00:52 Download gff for
UFO08529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34426-RA | 2..900 | 1..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:00:52 Download gff for
UFO08529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8802464..8802589 | 1..126 | 96 | -> | Plus |
| 3L | 8802640..8803270 | 127..757 | 100 | -> | Plus |
| 3L | 8803336..8803488 | 758..907 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:32:38 Download gff for
UFO08529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8795564..8795689 | 1..126 | 96 | -> | Plus |
| arm_3L | 8795740..8796370 | 127..757 | 100 | -> | Plus |
| arm_3L | 8796436..8796588 | 758..907 | 95 | -> | Plus |
