UFO08531.5prime Sequence
1124 bp (998 high quality bases) assembled on 2011-07-29
> UFO08531.5prime
CAGTCGACATGCGAAAGTTTAAAAGAAAAGTTTACCGCGAATATGAAAAT
TTCGTGCGACCCAAGACCCATGTGGAACCGGAGCCTCCAAAGCCCATAAA
CTTATCGATTGAGGACTTCAATGCGCGCGGAGAGATCGCCAATCCCCGTG
CTCCTTGTGTGGTCACCACCATCGATCCCGATTATATTAAGGACGCCAGT
GCGCAACGTTTGGCCAGAAAATTTCGCATGAAAACGGACATCCTACTCTT
GAGGGAGATTACCCGCAATCGCTTTATGTACTATGCTACGCAAGAACTTT
TTTTGGACCGAAAACGCGAGAAGGAATACCAAGACAATGTATACGAAAAG
GCCGAGGAGTTTCACAAGTTTGCAGAGGAGTCGCTCAAGAAAATGGAAGC
GGAGGAGTTTAAGAAAATGTTAGAGGCCCAAGAAAAGCTGAAGACACTGA
AGGAAAGCAAACTGAGCGAAGAGCTGAACGAGGTGAAGCTGGAGCATCAG
CGAGTGCTGATGGAAGTGCAGGAGGTCTACGGTCGCTTTCAGTATTTACT
CAAACTGATCAGCTACTTTGATGACACAGTTGAGGAGGAGCAAACCGAGG
GAGACGATGCCAGCAATAGGCTTAGCATGCCGCAGGAAATCGTAGCCATG
GAGATCACCGAACGACATCCAGCGGGTCTCGAGCAAGTGCGTCAAGTCCA
AGACTACATGGAGAAGATAGTGCGTCCGTATTTGGCAAAGCGGAATCATC
TCAATGCAGAGATTTGGATACGTGGCTATGAGAGAAATCGCTTAAAGGTG
TCCAACTACAACAGGCGCTTTTCTCAGTTGGCAATCTTGAACCACATCGT
AGCCATCCTCCATGACAGGCCCAGAGACGTACGAGCGTCAAGTGAAAGCC
AATGTGTTCCTCAAGGATCCCGAGTTCCTGCAGCGACGGGTGGCAGTCTT
CAGGAGCGTGCAAGGGTCTTATTAAATGACTTCGAGCAGAGAAACTGCAG
ACAAGCTGAATATTCAGCTAAATGCTATTTGTACATTATTCTTCAAGCAA
ATCAAAACAAAGTAGGCGGAGCAAGCGAGAGGTTACGCACGGCATCAAGC
AGCAGCCTAAGTGTGTCTCAGCAT
UFO08531.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30120-RB | 2533 | CG30120-RB | 1042..2154 | 9..1107 | 5040 | 97.7 | Plus |
| CG5189-RB | 2533 | CG5189-RB | 1042..2154 | 9..1107 | 5040 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18448101..18448867 | 236..999 | 3580 | 98.7 | Plus |
| 2R | 25286936 | 2R | 18447940..18448051 | 125..236 | 560 | 100 | Plus |
| 2R | 25286936 | 2R | 18447808..18447884 | 49..125 | 385 | 100 | Plus |
| 2R | 25286936 | 2R | 18447714..18447753 | 9..48 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:27:18 has no hits.
UFO08531.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:13 Download gff for
UFO08531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5189-RB | 1020..2132 | 9..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:32:40 Download gff for
UFO08531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30120-RB | 1042..2154 | 9..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:00:54 Download gff for
UFO08531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5189-RB | 1042..2154 | 9..1107 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:00:54 Download gff for
UFO08531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18447714..18447753 | 9..48 | 100 | -> | Plus |
| 2R | 18447808..18447884 | 49..125 | 100 | -> | Plus |
| 2R | 18447941..18448050 | 126..235 | 100 | -> | Plus |
| 2R | 18448101..18448871 | 236..1001 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:32:40 Download gff for
UFO08531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14335219..14335258 | 9..48 | 100 | -> | Plus |
| arm_2R | 14335313..14335389 | 49..125 | 100 | -> | Plus |
| arm_2R | 14335446..14335555 | 126..235 | 100 | -> | Plus |
| arm_2R | 14335606..14336376 | 236..1001 | 98 | -> | Plus |
