UFO08532.5prime Sequence
1131 bp (1015 high quality bases) assembled on 2011-07-29
> UFO08532.5prime
CAGTCGACATGAGCCACCGCTGTGAGATCCAATTGGACAACCCACGGGGG
GTCTATAGGGCCGGCGATACGGTCAATGGTCACGTCTATCTGACCCTTTC
GGAGCGGGCCCTAATCAAAGCAATATGCCTGGAGGCCAATGGATATGCGA
GCACTGCCTGGCAGCAGCCCCAAAAGCACAAGAATCAAAAAAAGAACGAG
CAGCCAGTGGTGGTTCAGAGTTTGGACTTTGATTATCGCGTGGATTATTT
TGCCAAAATCGATTATTTTGTGGGCTCGGAGGCCGCACAGCCACAGATAA
TGGAGGCGGGCACCTACAATTACGGTTTCCATGTGAAGCTGCCCAAGAAC
TGTCCGGGGAATTTCGAGGGGGGCCACGGACACATACGGTACACACTCCA
AGTACTCATCCACAGCAGTGCAGATCGTCCGCTGGAGGTGCTCCATGTAC
GCCAGCTGCAGATTTTCCCGCAGAACTCTCTGAGCCAGGAGACGCGGAGC
TGTGAGATCCAGATCTATGAGCAGACTCCTCGCCTTAGATTCTGGATGAA
GCCACTTCATCTGCAGCTCCAGATTCCCAGGCAGGGTTATTCGCCAGGAG
CAGGTATTTCTGTTCACTTAAAGCTGCATAACCCGGAGAAATTGACACTT
CGCGAGGCGGTGTATTCCCTCGTTCAGATCAGCACTTACGTTGCCCATCT
AAAGAATAAGCCCAAACGCTTGGAGACCAAGGTGGAGCGACAAACTGTCC
TAAGCAGCCGCCACGAGCTCCACAACCTCCCCCGTGGAGAACTGCAGAAT
TTTCAGCATCTTCACATGCTGCAAGTGCCACAACAGCGGCCACATTGACT
GTGGCAGGATGTGCCTGCCTGCAGCTCAACTACGAGGGGAGGTGCTGGTC
ACACCTCAGCAGAAAAGCGCTTAATTGCGGCCCGGATGCCGGTCATCATT
GAAATGTGACGCCGCCCTGTCCTGACAACTCTAATGCAGACCCATTGATG
GCAACTGCTCGACACTCTCAATCGAAACAGCATCCACATTGAATCGGATT
TAAGCATTTCCACCCATCTTGCTCGAGTTCCCGAAGCGAGTTCATGGTAA
CCCATCTGATGACCACAACCTAACTGGTCCC
UFO08532.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18744-RB | 1336 | CG18744-RB | 25..1137 | 9..1099 | 4860 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7797478..7798341 | 978..119 | 4075 | 99.2 | Minus |
| 3R | 32079331 | 3R | 7798636..7798747 | 120..9 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:27:21 has no hits.
UFO08532.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:14 Download gff for
UFO08532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18744-RB | 25..1150 | 9..1109 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:32:41 Download gff for
UFO08532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18744-RB | 25..1150 | 9..1109 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:00:55 Download gff for
UFO08532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18744-RB | 25..1150 | 9..1109 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:00:55 Download gff for
UFO08532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7797371..7798339 | 121..1071 | 97 | <- | Minus |
| 3R | 7798636..7798747 | 9..120 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:32:41 Download gff for
UFO08532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3623093..3624061 | 121..1071 | 97 | <- | Minus |
| arm_3R | 3624358..3624469 | 9..120 | 100 | | Minus |
