UFO08534.5prime Sequence
1085 bp (985 high quality bases) assembled on 2011-07-29
> UFO08534.5prime
CAGTCGACATGATGGAGACATTCCTCGTCCTGGGCCTGTGTTTCATCCTG
TACGAGGCATTGGATTTCTTTCAGGGCTGCATTCACAGTAATACCCCATC
GCCCAGCGATCAAATCGAAGCCTATCGCCGCGAACTCGACGAACAGCGCC
AGCAGCAGCAGCAGGAACAATTCCTGGCAGGATTGACGCCGTTGCTAGGC
GCTCAATTTGCCGCTGCCGCCGCCGCCGCGGCTGCTGCCGCCGGTTCGCA
GTCGACGTTGGGCAGCACGACCACGCCCACCGCCTCCACGGCCAGCGTGA
TAAGTGATTCATACGATCAGGAATCGCAATCGCAATCGCAATCTCAATCA
CAGTCCCAGTCGCAATCCAATCAAAATCAACAGCATTCGCTAAGCACTCC
TGGCCTGTTTCGTCCCGCCGCCTTGGGCTACTACGATCCGGAGGATCCAT
TGCATGCCACAAACTCCCTACCGCGCGACTTTTACTATCTACAGCAGCAG
CAGCTAAAGAACAAGGTCAGCTCAAGATCGCTACTCTCCAAGTTCTCATC
GACCAATTCGGATAATCGCATACATCCGGAGGCTGGAGCCGGTTCAGGGC
ATCATCATAGCGTACTTGGAGCAGCGTCTGTTATAACAAGTCAACCCTTA
CCATCTGGCGGTGAGATACCATCCAGTCTCTTCGATCAGCCGGGACAACC
GGCTGTGGTTGTGCCACCACTGCAATTGCAACCCTCATCACCGCTATTTG
TGGAGCTTAAGAGGGCGATTATAAGTCAGAATCAAAGATCACAACCGATA
AAGTATCACGCAAGAGAATCAATCGAAGAGCCACAGTGCCCTCAGTGCGA
GGAAGAGCAGATACAGTATTTGGGCCGAGACTTTGGACGATCTTGCCGAA
TCCGAGATCAGCGGTATCGCCAGCCGAGAGGAGACGACGACGACGACGAG
AGAGAGAGAGAGAGAGCGAACGAGAGCAGAGATCGGAGGAGCAGCATCCT
ACGTGGGAGAGCTACAGTGAGCAGAATTTTGTGCCGCCAACGGACACAGC
TTACAGGATCATCAATCGCATGACACTCGCACGAC
UFO08534.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15465-RB | 19353 | CG15465-RB | 3189..4273 | 9..1069 | 4685 | 97.1 | Plus |
| CG15465-RA | 16076 | CG15465-RA | 533..1617 | 9..1069 | 4685 | 97.1 | Plus |
| rg-RR | 16076 | CG44835-RR | 533..1617 | 9..1069 | 4685 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5175240..5176183 | 9..949 | 4460 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:27:53 has no hits.
UFO08534.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:21 Download gff for
UFO08534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15465-RA | 512..1584 | 9..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:33:06 Download gff for
UFO08534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rg-RJ | 2515..3587 | 9..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:01:14 Download gff for
UFO08534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rg-RR | 533..1605 | 9..1059 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:01:14 Download gff for
UFO08534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5175240..5176312 | 9..1059 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:33:06 Download gff for
UFO08534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5069273..5070345 | 9..1059 | 97 | | Plus |
