UFO08535.5prime Sequence
1116 bp (1015 high quality bases) assembled on 2011-07-29
> UFO08535.5prime
CAGTCGACATGGCAGCGCAGCTGAATCCATTCCGCAATGCCTTCCGGCTG
CCGTCCAAGCAGCGCATCAACTGGTTTCCCGGCCACATGACCAAGGGTAT
GCGGCAAATTCAGCAAAAACTACGAAATGTAGACTGCATAGTCGAGATTC
ACGATGCACGCATCCCATTGGCGGGCAGAAACTCCCAGTTCTTTGACACA
ATCACCGGAAGTGGTGTTAAACCGCATATTCTGGTGCTGAACAAAGTCGA
TCTGCTGGGCGCCAAACAGCAGAAGAGCGTGCTCCAGCAGCTGAGGAGAC
AGCAGCCCGAACTGCAGCACATCCTGTTCACCAACTGCAAGGATCAGCGC
AACAACGGCGTGCTGGACATCCTGCCCCTGGCAACGCGCCTCGTGAGCGA
GAGCAGTCGCTTCAATCGCACCCAAGCTGCCGAGCACAATCTGATGATCA
TCGGCGTGCCCAATGTGGGCAAGAGTTCCGTGATCAATGTGCTGCGAAAT
GTGCATCTCAAGAAGAAGAGCGCCGCACGCGTGGGTGCCGAGGCGGGTAT
AACTCGATCCGTCGGCGAACGCATCAAAATCCAAGAGAATCCGCCTGTTT
ACATGATCGACACACCCGGCATCCTCCAGCCCTCCATTAAGGATGATGAA
ATGGGCATGAAACTGGCCCTGGTGGGCTGCCTTCCCGATCATATTGTGGG
CGAGGATCTGATAGCCGACTATCTGCTGTACTGGCTGAATAGCCACCGCA
AATACGACTACGTGGAGATGCTAAAGCTCAGCTCCGGACCCAGTGACGAC
ATCAGCGCCGTGCTGGCGGAGTACGCTCATCGGGAGGAGCTATTCCACAA
GGTCAAGCAGTACGACGGACGCGTGAGGTGATGACAAATTTATTGGCGGC
CGCGCGAAAGTTCATTCACTTCTTTCGCTCCGGCCAGTTGGGTCACATGA
TCTGGACGACCCAGTGTTTCAGAGCAAGCTTCTAGACATCGTTTGGCCGC
GCGGGCCAGGTAGTGGTCATATCATAATCATAATCATAATCATATCCACA
CCTAGGCTAGGAGATCCTGGTCATGAACTAGTGCTGATCCCACCAAATAA
AACGCCCGGGGGCACG
UFO08535.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17141-RA | 1099 | CG17141-RA | 73..1042 | 8..973 | 4750 | 99.6 | Plus |
| HP1c-RA | 986 | CG6990-RA | 884..985 | 973..875 | 435 | 97.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22746529..22747273 | 950..207 | 3675 | 99.9 | Minus |
| 3R | 32079331 | 3R | 22747327..22747527 | 208..8 | 1005 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:27:12 has no hits.
UFO08535.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:11 Download gff for
UFO08535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17141-RA | 24..1004 | 1..980 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:32:35 Download gff for
UFO08535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17141-RA | 67..1047 | 1..980 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:00:51 Download gff for
UFO08535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17141-RA | 67..1047 | 1..980 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:00:51 Download gff for
UFO08535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22746500..22747272 | 208..974 | 99 | <- | Minus |
| 3R | 22747328..22747530 | 1..207 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:32:35 Download gff for
UFO08535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18572222..18572994 | 208..974 | 99 | <- | Minus |
| arm_3R | 18573050..18573252 | 1..207 | 98 | | Minus |
