UFO08537.5prime Sequence
1103 bp (976 high quality bases) assembled on 2011-07-29
> UFO08537.5prime
CAGTCGACATGCTCAAGTTTCTGTTAACTTTTGGCGCCGGGGTGTATACG
GGAATCTATGTCTCACAGAACTATGAGGTCCCCCGAGTGGATGATCCCCA
GAAGTTGATGCAGCGTTTCAACGAGAAACTCAAAGAACTAATGGATCAAA
CCAAGAACAAATCGCCCGGCGAGAAACTAGTGGATGACATCAAAAAGGAG
GCCAAGAAGATACTAGACGACGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAG
TTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATA
TCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATT
AAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAA
TCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATG
GTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAA
ACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAA
TAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCT
TGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCA
GAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGT
GAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGAAAT
TCCCGGATGAGCATTCATCAGCGGGCAGAATGTGATAAACGCCGATAACT
TGTGCTTATTTTTCTTTACGTCTTAAAAGCGTATATCCAGCTGACCGTCT
GTATAGTACATGAGCACTGACTGAATGCTCAATGTTCTTTACGATGCAAT
GGGATTATCAACGTGTATATCAGTGATATTTTCCATAGCTCTAGCTCTGA
AGA
UFO08537.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33170-RC | 357 | CG33170-RC | 70..282 | 9..221 | 1065 | 100 | Plus |
| CG33170-RB | 599 | CG33170-RB | 312..524 | 9..221 | 1065 | 100 | Plus |
| CG33170-RA | 842 | CG33170-RA | 211..348 | 23..160 | 690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22865876..22865960 | 76..160 | 425 | 100 | Plus |
| 3L | 28110227 | 3L | 22867395..22867460 | 156..221 | 315 | 98.5 | Plus |
| 3L | 28110227 | 3L | 22865770..22865826 | 23..79 | 285 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 17:28:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 790..857 | 123 | 68.1 | Plus |
UFO08537.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:22 Download gff for
UFO08537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33170-RB | 302..529 | 1..228 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:33:10 Download gff for
UFO08537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33170-RB | 302..529 | 1..228 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:01:18 Download gff for
UFO08537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33170-RB | 302..529 | 1..228 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:01:18 Download gff for
UFO08537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22865771..22865824 | 24..77 | 100 | -> | Plus |
| 3L | 22865878..22865960 | 78..160 | 100 | -> | Plus |
| 3L | 22867400..22867460 | 161..221 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:33:10 Download gff for
UFO08537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22858978..22859060 | 78..160 | 100 | -> | Plus |
| arm_3L | 22860500..22860560 | 161..221 | 100 | == | Plus |
| arm_3L | 22858871..22858924 | 24..77 | 100 | -> | Plus |
