UFO08539.5prime Sequence
1128 bp (1002 high quality bases) assembled on 2011-07-29
> UFO08539.5prime
CAGTCGACATGAGTTGTGCTGCACCGCGATGCCGACCGCAGTTTGGATCC
TGTGGGTCTGGTTGTAAGCCCTGCGGCGGAGGTGGCTGCTGTGGATCCTG
CTGTGTTGGTGGTTCCTGTTGCAGGGGCGGTACAGGAGGATGCTGCGGCG
GATCCTGCGGCGGATCATGTGGCGGTTCATGTGGTGGATCCAGTGGCGGA
TGCTGTGGCCCACCGCCCTGTGCCGTGGTCTCGTACCGCTTGACCTACGG
CCCCGTGGGTCCCCTGCTGCCCTGCATGAAATGCACCTGCAACTGCGGAT
GTTGCAGCGGCGGTTGTGCGCCACCTTTCTATTTTGTGCCGAACAAATGC
AAAAATTGCTGGGAATGGGGCTGCTTTGGCCCGCTGTACGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCT
GAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGA
GTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCA
GTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAA
CGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGC
GTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATT
GGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGA
CGAAAACATATTCTCAATAAACCCTTTAAGGGAAATAGGCCAGGTTTTCA
CCGTACACGCCACATCTTGCGATATATGTGTAGAACTGCGGAAATCGTCG
TGTATTCCCCTCAGAGCGATGAAACGTTTCAGTTGCTCATGGAAACGTGT
AACAGGTGACACTATTCCCATATCACAGCTCACGTCTTTCATGCAATACG
ATCGATGACCATCATCAGGCGGCCAAGATGTAATTAAGCGGAATAAACTT
GGCTATTCTACGCTTGTAGCGTATAATC
UFO08539.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34167-RA | 661 | CG34167-RA | 198..578 | 9..389 | 1905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16003064..16003444 | 389..9 | 1905 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:27:24 has no hits.
UFO08539.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:14 Download gff for
UFO08539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34167-RA | 198..581 | 9..393 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:32:44 Download gff for
UFO08539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34167-RA | 198..581 | 9..393 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:00:57 Download gff for
UFO08539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34167-RA | 198..581 | 9..393 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:00:57 Download gff for
UFO08539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16003064..16003444 | 9..389 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:32:44 Download gff for
UFO08539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16003064..16003444 | 9..389 | 100 | | Minus |
