UFO08542.5prime Sequence
1140 bp (1025 high quality bases) assembled on 2011-07-29
> UFO08542.5prime
CAGTCGACATGATCTACTCGGACAATTGCTGTTGCTGCGTGGATCTGAAG
TGCGGAAGCATCCTGATAGCCATCGTTGAGGTGCTAATACGTGGACTAGA
TCGCTTCTTTGTTGATCGTGACAGCCTGCTGGGACTTTTTTCCCTTGTGG
TGAGCGGTATCTACGTTATCTGCTGCATTTTTCTACTGCTGGGAGCAGTT
CTGGGCCTGAGATATTTTCTGTTGCCTTACCTCTCAGTTTCCTGCCTGCG
GTTCTTCATTTTAGTTGCCGAGGGCGTGTTTGTAGCCACAGAGGGCATCA
TGAATGAATATCTAGTTTTCGATATTCTTCAATCCCTTCTAGGCTTGTAC
TTTTGGCTGGTGGTCTACTCCTATTATGATCGCTTAAAGGACGCGGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCA
ACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTC
ATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCAT
CACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCG
CCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTC
CATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGG
CTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAATAGGCCAGGT
TTCACCGTACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAA
TCGTCGTGTATCACTCCAGAGCGATGAAAACGTTTCAGTTGCTCATGGAA
AACGGTGTACAGGGTGACACTATCCCATATCACAGCTCACGTCTTCATGC
ATACGAATCGATGACATCATCAGGCGGACAGAATGTGATTAGCGGATAAC
TGGCTATTCTTACGCCTACGATAGGCGTAATCCACCTGAA
UFO08542.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34230-RA | 546 | CG34230-RA | 48..434 | 9..395 | 1935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11861655..11861788 | 203..336 | 670 | 100 | Plus |
| 2R | 25286936 | 2R | 11861357..11861469 | 9..121 | 565 | 100 | Plus |
| 2R | 25286936 | 2R | 11861516..11861602 | 118..204 | 435 | 100 | Plus |
| 2R | 25286936 | 2R | 11861845..11861903 | 337..395 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:28:04 has no hits.
UFO08542.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:23 Download gff for
UFO08542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34230-RA | 48..444 | 9..407 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:33:13 Download gff for
UFO08542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34230-RA | 48..444 | 9..407 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:01:20 Download gff for
UFO08542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34230-RA | 48..444 | 9..407 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:01:20 Download gff for
UFO08542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11861516..11861601 | 118..203 | 100 | -> | Plus |
| 2R | 11861656..11861788 | 204..336 | 100 | -> | Plus |
| 2R | 11861845..11861903 | 337..395 | 100 | == | Plus |
| 2R | 11861357..11861465 | 9..117 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:33:13 Download gff for
UFO08542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7748862..7748970 | 9..117 | 100 | -> | Plus |
| arm_2R | 7749021..7749106 | 118..203 | 100 | -> | Plus |
| arm_2R | 7749161..7749293 | 204..336 | 100 | -> | Plus |
| arm_2R | 7749350..7749408 | 337..395 | 100 | == | Plus |
