UFO08544.5prime Sequence
1088 bp (977 high quality bases) assembled on 2011-07-29
> UFO08544.5prime
CAGTCGACATGAAATACTTCGAATTCCTAAGCCTTTCGTCGGTGGGCCTC
TGCATAGCCTGTGGGGACTTGCTATTAGCAGTGAGCATACTGGGTCCTTC
GAGCTTTTACCTATACCTCGATTTCATGGATATTGAAAAATGGGAACAGG
ATGCCGAAGTGGAAGCTTTGACTCCCATTGGAACCTTCTTTTCAACATTG
GTGAACTATCTGTGGGTGCGAGAGTTCTCGCAGGTTTTCTATATGACAGC
AACGTTTATAATTTGGGTGAAGGCAATGATAAACCTAATGGTGGCCTGTA
TTCTTATCGACGGCATAAAGCAGAAACGTCTCGTATGTATTGCTCCCTGG
TTGATAAACTCATGCCTATCAATGGTTGTTGAAACGGGCATTTTTGTGAG
CCTGGAGCTGCGAATTGATGAAGTTGATGCCGCAGTGGATCGTCGAATAG
CGAGAAGCCTAATCTTTGGCGTATTTATAGTGCTGAACGCGTTATTTTCG
TATGGTATCTTTGCTCTTTATCGCAAGCTAAAGTCTGACCCCAGTGAGAA
TGTTGAAGTCATTCCCCAAAGCCCGCCACACACATTTAATGCCGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCAT
AATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATG
ACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCG
TTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGTATCTATCAAC
AGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCAT
CGCAGTACTGTTGTATTCATTAAGCATTCTGCCGACAGGAAGCCATCACA
AACGGCATGATGAACCTGATCGCAGCGGCATCAGCATCTTGTCGGCGTGC
GTATATATTTGCCCATGGTGAAACGGGGGCGAATACTGGTCGTACTGGCC
CGTTTAAATCAAACTGGTGACCTCACCAGGATGGCTGAAACAAGAAACGT
ATTCCATTAGCCTAAGGGAATGCAAGGCTCCGTAACCG
UFO08544.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34138-RA | 748 | CG34138-RA | 72..656 | 9..593 | 2910 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19635020..19635212 | 9..201 | 950 | 99.5 | Plus |
| 3R | 32079331 | 3R | 19635456..19635614 | 322..480 | 795 | 100 | Plus |
| 3R | 32079331 | 3R | 19635267..19635389 | 201..323 | 615 | 100 | Plus |
| 3R | 32079331 | 3R | 19635673..19635787 | 479..593 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:28:09 has no hits.
UFO08544.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:25 Download gff for
UFO08544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34138-RA | 67..660 | 4..597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:33:18 Download gff for
UFO08544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34138-RA | 67..660 | 4..597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:01:24 Download gff for
UFO08544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34138-RA | 67..660 | 4..597 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:01:24 Download gff for
UFO08544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19635675..19635791 | 481..597 | 98 | == | Plus |
| 3R | 19635015..19635212 | 4..201 | 98 | -> | Plus |
| 3R | 19635268..19635389 | 202..323 | 100 | -> | Plus |
| 3R | 19635458..19635614 | 324..480 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:33:18 Download gff for
UFO08544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15460737..15460934 | 4..201 | 98 | -> | Plus |
| arm_3R | 15460990..15461111 | 202..323 | 100 | -> | Plus |
| arm_3R | 15461180..15461336 | 324..480 | 100 | -> | Plus |
| arm_3R | 15461397..15461513 | 481..597 | 98 | == | Plus |
