UFO08546.5prime Sequence
1145 bp (1036 high quality bases) assembled on 2011-07-29
> UFO08546.5prime
CAGTCGACATGCAGAATCCCATTTGTGAACCGTTCACCAGTTGGCCGGTA
AAGTTCGACATCAACCAGCTCATCAAGGAGTTCCAGCCCGAGGAGAAGGG
GCGCCAGGTAGATGAGGATAAGTCGCCGCGGGACTTTCTCCACCTACCCG
ACAACAACTGGGTGGTCCTGCCCAGTTTTAAGTACCAATTCGAGCACTTG
ACCCCGTATCTTTCCTGCCGCCAGAGCAAATATATGCGGTGCCGCTTTCA
GAAGTTTTTAGATAATGTTCCCAGCAGCTATGTGACCATCTCCTTGTATG
GCTCCAATGTGAGCAACATGCCTAAGCCGAGGCGAAAGAGTCTGAATGGC
CAGTTCTACGGGGTGGATAACAAACTGGCTCCTGTTCCGGCGGTCGCAGA
TCCTCGCTCTCCTCCGCACCGAAAGGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGAT
GGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTC
GATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATT
CATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACC
TGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCC
CATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAAT
CAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCT
CAATAAACCCTTTAGGGAAATAGCCAGGTTTTCACCGTAACACGCACATC
TTGCGAATATATGTGTAGAACTGCCGGAAATCGTCGTGTATCACTCCAGA
GCGATGAAACGTTCAGTTTGCTCATGGAAACGGTGTAACAGGGTGAACCT
ATCCCAATTCACCAGCTCACGTCTTTCATTGCAACGATCGGATAGAACAT
TCATCAGGGCGCAAGGATTAGGCGAATAACTGGGCTATTTTCTTT
UFO08546.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34298-RA | 548 | CG34298-RA | 48..464 | 9..425 | 2070 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29999842..30000149 | 9..316 | 1540 | 100 | Plus |
| 3R | 32079331 | 3R | 30000211..30000319 | 317..425 | 530 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:28:16 has no hits.
UFO08546.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:26 Download gff for
UFO08546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34298-RA | 40..464 | 1..425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:33:23 Download gff for
UFO08546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34298-RA | 40..464 | 1..425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:01:28 Download gff for
UFO08546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34298-RA | 40..464 | 1..425 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:01:28 Download gff for
UFO08546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29999834..30000149 | 1..316 | 99 | -> | Plus |
| 3R | 30000211..30000319 | 317..425 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:33:23 Download gff for
UFO08546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25825556..25825871 | 1..316 | 99 | -> | Plus |
| arm_3R | 25825933..25826041 | 317..425 | 99 | == | Plus |
