UFO08553.5prime Sequence
1121 bp (1021 high quality bases) assembled on 2011-07-29
> UFO08553.5prime
CAGTCGACATGGCTCTACCCGATGGACTTTCCAACAAAATGAAGGTTTTC
CAGGCCGTTAACGAGCTGCCCGTTTTTCTGAAAGGCGGACCTGCGGATAA
GATTTTATTTGGCATTACGGCTGGACTGTGTGGCCTTGGCATTGTTAGCT
TTGTCCACCTGGTCTACACAATGGGATTCGCCAAAAAGAAGGCCGCAAGC
TTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCA
TAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCAT
GACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGC
GTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAA
CAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCA
TCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATC
ACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGC
CTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCC
ATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGC
TGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGT
TTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGG
AAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTC
ATGGAAAACGGTGTAACAAAGGGTGAACACTATCCCATATCACCAGCTCA
CCGTCTTTCATTGCCATACGAAATTCCGGATGAGCATTCATCAGCGGGCA
AGATGTGAATAAAGGCCGGATAAAACTTGTGCTTATTTTTCTTACGGTCT
TTAAAAGCGTATATCCAGCTGAACGGTCTGATATAGTACATGAGCACTGA
CTGAATGCCTCAATGTTCTTACGATGCAATGGATTTATCACGTGCTAATC
AGTGATTTTTCTCCATTAGCTTCTTAGCTCTGAAGATCTAACTCGAAGCT
ACTTACGAGTAGATCAAATTA
UFO08553.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34172-RD | 303 | CG34172-RD | 68..253 | 9..194 | 930 | 100 | Plus |
| CG34172-RC | 866 | CG34172-RC | 631..816 | 9..194 | 930 | 100 | Plus |
| CG34172-RB | 295 | CG34172-RB | 60..245 | 9..194 | 930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2192575..2192723 | 194..46 | 730 | 99.3 | Minus |
| 2L | 23513712 | 2L | 2192777..2192822 | 54..9 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:28:25 has no hits.
UFO08553.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:28 Download gff for
UFO08553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34172-RA | 55..254 | 2..202 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:33:29 Download gff for
UFO08553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34172-RB | 52..251 | 2..202 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:01:34 Download gff for
UFO08553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34172-RB | 52..251 | 2..202 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:01:34 Download gff for
UFO08553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2192575..2192715 | 54..194 | 100 | <- | Minus |
| 2L | 2192778..2192830 | 2..53 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:33:29 Download gff for
UFO08553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2192575..2192715 | 54..194 | 100 | <- | Minus |
| arm_2L | 2192778..2192830 | 2..53 | 92 | | Minus |
