UFO08554.5prime Sequence
1085 bp (996 high quality bases) assembled on 2011-07-29
> UFO08554.5prime
CAGTCGACATGGATCTCGTCGAGGTGTATTACTTTATATCCTTCATTCTG
ATATTCCTTATTTTGATAAGGGCCTATATCTGTCCCAATCACAAGTGGAA
GTGCGTCTGCTGCCTGCAATATCGGCACGAATCTGATCGTAATGTATTCA
ACGCACAGGAGGATCCTTCATCGAACCGCTATGGCGACATTTTCTTCATC
GAACCCGGCAGCGTGGAGGCCAACCGCATTCGCGATCAACTGGAAAAGGA
TGAAAAGGATTTACCCAGCTACGACGAGGTGATGCGCATGTGTAACCTGA
CCACTCCCACAGCAGCAGCGGCTGGAATGCCTGTTCCCCAATCGCCCCTC
GGTGTACCCAGTCCCATTGGAATCGCGGCACTGCCGGCGCCACCGTATTC
GGAGACAGATCCACATTCCTCGTCCGCCGCAGAAGCCACTGTCATCGCAA
TGGAACCGATGGAGCCATCCACCTCCCGCGCGGCACAGATTCCACCCAGC
TCCGGATCTGGTCCTCCTGCTCCATTGCCAACGACAGCGGTGGCAAGCTT
TCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATA
ATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGA
CTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGT
TCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACA
GGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATC
GCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAAGCCATCA
CAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCC
TTGCGTATATATTTGCCCATGGTGAAACGGGGGCGAGAGTGTCCATATTG
CCACGTTAATCAAACTGGTGAACTCACCCAGGATGCTGAGACGAAAACAT
ATCTCATAACCTTTAGGATAGCCAGTTCACGTACCCGCCCAATCTGCAAT
AATTGTGTAAACTGCGATCGTCTGCTTCTCAGCGA
UFO08554.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12963-RC | 785 | CG12963-RC | 37..570 | 9..542 | 2670 | 100 | Plus |
| CG12963-RJ | 782 | CG12963-RJ | 158..567 | 133..542 | 2050 | 100 | Plus |
| CG12963-RH | 867 | CG12963-RH | 243..652 | 133..542 | 2050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15561814..15562221 | 135..542 | 2040 | 100 | Plus |
| 2R | 25286936 | 2R | 15556414..15556478 | 71..135 | 325 | 100 | Plus |
| 2R | 25286936 | 2R | 15556295..15556358 | 9..72 | 320 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 17:28:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 3427..3468 | 249..208 | 111 | 73.8 | Minus |
UFO08554.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:29 Download gff for
UFO08554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12963-RC | 27..569 | 1..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:33:31 Download gff for
UFO08554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12963-RC | 28..570 | 1..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:01:36 Download gff for
UFO08554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12963-RC | 28..570 | 1..542 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:01:36 Download gff for
UFO08554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15556286..15556357 | 1..71 | 94 | -> | Plus |
| 2R | 15556415..15556478 | 72..135 | 100 | -> | Plus |
| 2R | 15561815..15562221 | 136..542 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:33:31 Download gff for
UFO08554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11443791..11443862 | 1..71 | 94 | -> | Plus |
| arm_2R | 11443920..11443983 | 72..135 | 100 | -> | Plus |
| arm_2R | 11449320..11449726 | 136..542 | 100 | == | Plus |
