UFO08555.5prime Sequence
1110 bp (973 high quality bases) assembled on 2011-07-29
> UFO08555.5prime
CAGTCGACATGGTGACAAAGTTGCTTCTACTGCTGCCATTTGTGGCCATT
GTACAAGCTGAAGTGGATTTTACCGGTGGACGTATAGCACCTTATGCACC
AACTGGTTGGCATCCGCAGATTCCATTCAACTTACCCAACGAGTATGTGC
CTGCTATCCGATCAAGTCAGGGAGTAGAAATCACAAAGGCACGAGTGGAC
CAGTTCGATCCAGTGGAAAAGCCCCAGCCAAATTATTTGCCTCCAAATCA
ACTGGATATACCCGAGGAAGAGATTTTGCCCACCTCACGACCGTCCAACA
AGTACGGTCCGGCAGATCCGAAATTTAAAATCATTTATCCTGATGATGAG
GAGCCAGTTACTGCAAAAAATATCGTAGACAATCAGCAGCCCAAAATCAG
AGAGGGACGTTACTTCGTCATTTCGCAGGACAATAAACTACAAAGAGTTT
CTTTCAGCTCCCAGCAAAACGCAGATGCAGATGCAGATGATTTTACGGCT
CAGTTGACTTACTCCACTGTGGGGCAACTCAAGGATCCTGTGTATCGATA
CAACAGACAGGGACAACTGGAGCGGGTCCTGAAGGCAAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAAT
CATAATCATAATCACAACTAGCCTGGAGATCCTGGTCATGACTAGTGCTT
GGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAA
ATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAA
GCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTG
TTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACCGCAT
GATTGAACCTGAATCGCCAGCGCATCAGCACCTTGTCGCCTTGCGTATAA
TATTTGCCATGGTGAAACGGGGGGCGAAGAGTTGTCATTATGCCACGTTA
AATCAAACTGGTGAAACTCACCCAGGGAATGCCTGAAACGAAAAACATAT
CTATTACCTTAAGGAATAGCCAGGTTTCACGTAACCGCCCAATCTTGCAT
TATTGTGTTA
UFO08555.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34199-RA | 694 | CG34199-RA | 32..607 | 9..584 | 2880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20287692..20288259 | 17..584 | 2840 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:28:31 has no hits.
UFO08555.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:30 Download gff for
UFO08555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34199-RA | 6..593 | 1..590 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:33:32 Download gff for
UFO08555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34199-RA | 25..612 | 1..590 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:01:37 Download gff for
UFO08555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34199-RA | 25..612 | 1..590 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:01:37 Download gff for
UFO08555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20287692..20288264 | 17..590 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:33:32 Download gff for
UFO08555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16175197..16175769 | 17..590 | 99 | == | Plus |
