UFO08556.5prime Sequence
1107 bp (990 high quality bases) assembled on 2011-07-29
> UFO08556.5prime
CAGTCGACATGGCTAAATTGAGTGCCCTGCTGCTGCCCCTAATTTTGTTT
ATTGTGGCCTTTGTGGCGCACACAACTTTTGCTACAGTGCAGCCAAAAGC
ACCGAACTTCCAGTACTTCGAAAGGCCCAAGTACCGTTATCCCTACTACG
ATGAACACGGGCGCGGAAAACTTCTCTACGGCTACGGCGGACCGGAATTG
TACCAATACAAGACCTACACGCCCTTGGAGGGCATTCACGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCT
GAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGA
GTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCA
GTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAA
CGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGC
GTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATT
GGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGA
CGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCA
CCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATC
GTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGA
AAACGGTGTAACAAGGTGAACACTATCCCATATCACCAGCTCACCGTCTT
TCATTGCCATACGAATTCCGATGAGCATTCATCAGCGGGCAGATGTGAAT
ACGCCGATAAACTTGTGCTTATTTTTCTTACGTCTTTAAAAGCGTAAATA
TCAGCTGACCGGTCTGGTTAAGTACATGACCACTGACTGGAATGCTCAAT
GTTCTTTACGATGCATGGTAATATCACGGTGGTAATCATGAATTTTCCAT
TAGCTCT
UFO08556.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34115-RA | 418 | CG34115-RA | 106..337 | 8..239 | 1160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20976737..20976853 | 123..239 | 585 | 100 | Plus |
| 2R | 25286936 | 2R | 20976595..20976681 | 39..125 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:28:34 has no hits.
UFO08556.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:30 Download gff for
UFO08556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34115-RA | 94..325 | 8..239 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:33:33 Download gff for
UFO08556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34115-RA | 106..337 | 8..239 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:01:39 Download gff for
UFO08556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34115-RA | 106..337 | 8..239 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:01:39 Download gff for
UFO08556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20975593..20975623 | 8..38 | 100 | -> | Plus |
| 2R | 20976595..20976680 | 39..124 | 100 | -> | Plus |
| 2R | 20976739..20976853 | 125..239 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:33:33 Download gff for
UFO08556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16863098..16863128 | 8..38 | 100 | -> | Plus |
| arm_2R | 16864100..16864185 | 39..124 | 100 | -> | Plus |
| arm_2R | 16864244..16864358 | 125..239 | 100 | == | Plus |
