UFO08558.5prime Sequence
1109 bp (990 high quality bases) assembled on 2011-07-29
> UFO08558.5prime
CAGTCGACATGACTACAGAAAAAGGGGAGCAGTTGAGACAACAACTTATA
GCGGCGGTGGTAAAGAAACGAGCGGCGATTGCGAGAGCCCATGAAATCGT
GGTGCGGCTTTTGGAGCCCGGAATACCGGAGCCCGAGTTCCTGTCCCTGC
TCTGTGAGATTGGCCCCCCAAATTATTCAGACATAGTGGATGAGCGGGAA
ATAAACAAACTTTGTGGATATCCACTTTGTTCGACAGTTCTAGAAAACGT
TCCCAAGCAAAAGTACAGTATCTCCGCTTCCAAAAACAAAGTATACGACA
TCACAGAACGCAAGAAATTCTGTTCCGGATACTGTTTTAAGGCCTCCGAA
TATATTAAGTCACAGGTGCCCACATCGCCATTGTGGCTGCGAGATAGGGA
GACGAGACCTAGCTTTCAGCTGCTACCACGAAATACTGCAAGCTTTCTAG
ACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAGTCAT
AATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGT
GCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGA
ACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGT
CCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGT
ACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACG
GCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGT
ATAATATTTGCCCATGGTGAAACGGGGGCGAAGAAGTTGTCCATATTGGC
CACGTTTAAATCAAAACTGGTGAACTCACCCAGGGATTGGCTGAGACGAA
AACATATCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTCACGTACAC
GCCACATCTGCGAATATATGTGTAGAACTGCCGAAATCGTCGTGCTATTC
ACTCCAGGAGCGATGAAACGTTTCAGTTTGCCTCATGAAAACGGTGTACC
AGATGAACCTATCCCATATTCCACAGCTCACCGGTCTTCATGCCTCCGAA
TCCGGAGTG
UFO08558.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34183-RA | 533 | CG34183-RA | 33..461 | 9..437 | 2100 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9890133..9890322 | 437..248 | 935 | 99.5 | Minus |
| 2L | 23513712 | 2L | 9890542..9890655 | 149..36 | 555 | 99.1 | Minus |
| 2L | 23513712 | 2L | 9890386..9890484 | 247..149 | 480 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:28:37 has no hits.
UFO08558.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:31 Download gff for
UFO08558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34183-RA | 42..476 | 1..437 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:33:36 Download gff for
UFO08558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34183-RA | 27..461 | 1..437 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:01:41 Download gff for
UFO08558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34183-RA | 27..461 | 1..437 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:01:41 Download gff for
UFO08558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9890542..9890653 | 38..149 | 99 | <- | Minus |
| 2L | 9890133..9890322 | 248..437 | 99 | <- | Minus |
| 2L | 9890386..9890483 | 150..247 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:33:36 Download gff for
UFO08558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9890542..9890653 | 38..149 | 99 | <- | Minus |
| arm_2L | 9890133..9890322 | 248..437 | 99 | <- | Minus |
| arm_2L | 9890386..9890483 | 150..247 | 98 | <- | Minus |
