UFO08566.5prime Sequence
1137 bp (1004 high quality bases) assembled on 2011-07-29
> UFO08566.5prime
CAGTCGACATGACCAAAGCGAATAAAACGCCGCAAAAAGCAAGTGAACCG
AATATAAATGGTTCCTTCACACCAGTTCGATATTTGGACAGCCAGCGCCT
GCAATCGCCCACGAGTCACGATGCGAATTTAGCCACCTGCAAAACCAGAT
TGGAAACAATAGTCAAACAACTCCAGGATAACTACGCTAAATGGCAGCTG
GCCCATCAGCGGGGCACCTCTATTTGCTATACTATCGAAGCCAAGAAGAC
CAAGTGTCTGGAGAAAAGCCAGGATGAAGGCAGCTCCCTTTACCCAGATG
ATCTCCTACTTCCCTGCAACAAGTTGGCCATCATAGCCTCTATTTTCGGG
GATATCGCAAATAATACAAAGGAGATACTAAGACAACTGAGAGGCATATT
AAAATTACCGGGATCTGCAGCGGATACGATATTCTACAGGTCCTGGAAGT
TGCAGCAATTCGTGGTTTTCGCGAAGGAGCTATCCGAAAGATATGAGAAG
GAGGCTCTGGTCAAAATGGAAGTTGCCGGTAACATTGCTCACTCGACTGA
AAGAAGCCAGCTCATTGCGCACACAACTTTATGGGAATTTCCCGAGCACG
TGGACTCCTATGTCCATCTGGGGTTTCTTCTCCTTGCCGAAGAAGTCAGT
TTAAGGCAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCG
ACATGCAGCATCACAAACGCATGATGACTGAATCGCAGCGCATCAGCACT
GTCGCTGCGTATAATATTGCCCATGTGAAACGGGGCGAAGAGTGTCATAT
GCCACGGTTAAATCAAACTGGGTGCATTACCAGGATGGCTGAACGAAAAC
ATTCCATTACGTAGATGGCAGGTTCACGTAACCGCCC
UFO08566.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34174-RA | 720 | CG34174-RA | 47..697 | 9..659 | 3255 | 100 | Plus |
| CG10880-RB | 1282 | CG10880-RB | 1110..1241 | 659..528 | 660 | 100 | Minus |
| CG10880-RA | 1285 | CG10880-RA | 1113..1244 | 659..528 | 660 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2214438..2214887 | 82..531 | 2250 | 100 | Plus |
| 2L | 23513712 | 2L | 2215013..2215144 | 528..659 | 660 | 100 | Plus |
| 2L | 23513712 | 2L | 2214312..2214384 | 9..81 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:28:43 has no hits.
UFO08566.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:32 Download gff for
UFO08566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34174-RA | 1..664 | 4..667 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:33:39 Download gff for
UFO08566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34174-RA | 47..703 | 9..667 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:01:44 Download gff for
UFO08566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34174-RA | 47..703 | 9..667 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:01:44 Download gff for
UFO08566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2214312..2214384 | 9..81 | 100 | -> | Plus |
| 2L | 2214438..2214884 | 82..528 | 100 | -> | Plus |
| 2L | 2215014..2215150 | 529..667 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:33:39 Download gff for
UFO08566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2214312..2214384 | 9..81 | 100 | -> | Plus |
| arm_2L | 2214438..2214884 | 82..528 | 100 | -> | Plus |
| arm_2L | 2215014..2215150 | 529..667 | 97 | == | Plus |
