UFO08567.5prime Sequence
848 bp (848 high quality bases) assembled on 2011-07-29
> UFO08567.5prime
CAGTCGACATGAATATTTTGACAAAAGTAAAATACAGCTGCAGGGTGAGC
TCGGTTTTAAACAGAGATGTGAAGCAGCACGGAAAGCAATTCATGTTTGA
TACGCGGGAAGAAACTTCTTGGAATTCAGATGAGGGAACCCCCCAATTCA
TTACCATTAGCTTGGAGGAGCCACAGAAAGTAGCTGGATTTAGTTTCCAG
TTCCAAGGCGGATTCTCTGGCCAAAAATCCGAACTGATCATGTACTCCGC
TGACGGAGCCCAAGTTCACCAAGAGCCATTCTACCCAGAAGATATCAACT
CCCCACAGCTTTTTCAGATTGCGGAATCAGTCCGGGAAAACCCCTGCTCA
AAGCTAAAGTTCGTCTTCGAGTCCAGCACCGATCTATTTGGTAGAATCAT
TGTTTACGATCTCCAGCTGTTCGGCGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGAT
GGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCCAAGCGAGCT
CGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAATACTGTTGTAAT
TCATTAAGCATTCTGCCGACATGGAAGCCATCACTAACGGCATGATGAAC
CTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGC
CCATGGTGAAAACGGGGGCGAAAAGTCGTCCATATGGCCACGTTAAAT
UFO08567.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34213-RA | 518 | CG34213-RA | 54..470 | 9..425 | 2085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23967172..23967464 | 425..133 | 1465 | 100 | Minus |
| 2R | 25286936 | 2R | 23967515..23967611 | 135..39 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:28:47 has no hits.
UFO08567.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:33 Download gff for
UFO08567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34213-RA | 25..441 | 9..425 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:33:41 Download gff for
UFO08567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34213-RA | 54..470 | 9..425 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:01:46 Download gff for
UFO08567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34213-RA | 54..470 | 9..425 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:01:46 Download gff for
UFO08567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23967172..23967462 | 135..425 | 100 | <- | Minus |
| 2R | 23967516..23967606 | 44..134 | 100 | <- | Minus |
| 2R | 23967658..23967692 | 9..43 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:33:41 Download gff for
UFO08567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19854695..19854985 | 135..425 | 100 | <- | Minus |
| arm_2R | 19855039..19855129 | 44..134 | 100 | <- | Minus |
| arm_2R | 19855181..19855215 | 9..43 | 100 | | Minus |
