UFO08570.5prime Sequence
1110 bp (1016 high quality bases) assembled on 2011-07-29
> UFO08570.5prime
CAGTCGACATGTCGGAAACTAGCTCCAAGGATAATGTCAAAACGGCAATG
ACCTATATTTGTGGAGAATGCCATCATGAAAACGAAATGCGCCCCAGGGA
TCCGATTCGTTGTCGCGAGTGTGGATATCGTATCATGTACAAAAAGCGCA
CCAAGCGTCTTGTTGTCTTTGATGCCCGTGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAA
TCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGAT
TCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCC
AGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGA
GCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGT
AATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCAAGATG
AACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATT
TGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTT
AAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACAT
ATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACG
CCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTAT
TCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTA
ACAAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCA
TACGAAATTCCAGGATGAGCATTCATCAGCGGGCAGAATGTGAATAAGGC
CGGATAAACTTGTGCTTATTTTTCTTTACGTCTTTAAAAGCCGTATATCC
AGCTGACGGTCTGGTTATAGTACATGAGCACTGACTGAAATGCCTCAATG
TTCTTTACGATGCATGGGATTATCACGGTGGTATATCAGTGATTTTTTTC
TCAATTAGCCTATAGCTCTGAAGATCATACTTCGTAAGCATACCTTAACG
AGTAGATCAA
UFO08570.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb12-RA | 353 | CG34186-RA | 80..250 | 9..179 | 855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15145179..15145273 | 159..65 | 475 | 100 | Minus |
| 2R | 25286936 | 2R | 15145383..15145440 | 66..9 | 290 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 17:28:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 748..815 | 123 | 68.1 | Plus |
UFO08570.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:34 Download gff for
UFO08570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34186-RA | 51..232 | 1..183 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:33:46 Download gff for
UFO08570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb12-RA | 72..253 | 1..183 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:01:50 Download gff for
UFO08570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb12-RA | 72..253 | 1..183 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:01:50 Download gff for
UFO08570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15145071..15145090 | 160..179 | 100 | <- | Minus |
| 2R | 15145179..15145271 | 67..159 | 100 | <- | Minus |
| 2R | 15145383..15145447 | 1..66 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:33:46 Download gff for
UFO08570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11032576..11032595 | 160..179 | 100 | <- | Minus |
| arm_2R | 11032684..11032776 | 67..159 | 100 | <- | Minus |
| arm_2R | 11032888..11032952 | 1..66 | 93 | | Minus |
