UFO08573.5prime Sequence
1102 bp (1014 high quality bases) assembled on 2011-07-29
> UFO08573.5prime
CAGTCGACATGGCTATGGCTAATGTGGACAAAGGTGAACTTATGGACCAG
GTTAAGCAACAGATTGCTGTTGCGAATGCCCAGGAATTGCTCACGCAAAT
GACCGAAAAGTGCTTCAAAAAATGTGTCAATAAGCCGGGAACTTCCCTCG
ATTCGTCCGAACAGAAATGCATTTCCATGTGCATGGACCGGTTTATGGAC
TCGTGGAACCTCATTTCTCGGGTGTACGGCCAAAGAATACAACGTGAACA
ATCCAAGTTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCT
AGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGC
CCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCA
TTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGC
CCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGC
CGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGC
ATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGG
GGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAAC
TCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTA
GGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATAT
GTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAA
ACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCC
CATATCACCAGCTCACGTCTTTCATTGCCAATACGAAATTCCGATGAGCA
TTCATCAGCGGGCAAGAATGTGAATAACGCCGATAAAACTTGTGCTTATT
TTTCTTTACGTCTTTAAAAAGCGTATATCAGCTGACGTCCTGCTTAAGTA
CATGAACAACTGACTGAATGCTCAAATGTTCTTACGATGCATGGATTATC
AC
UFO08573.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34132-RA | 535 | CG34132-RA | 147..398 | 9..260 | 1260 | 100 | Plus |
| Tim13-RA | 442 | CG11611-RA | 106..289 | 25..208 | 260 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7885649..7885804 | 9..164 | 780 | 100 | Plus |
| 2L | 23513712 | 2L | 7885875..7885972 | 163..260 | 490 | 100 | Plus |
| 3L | 28110227 | 3L | 11774213..11774396 | 208..25 | 260 | 76.1 | Minus |
Blast to na_te.dros performed 2014-11-26 17:28:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 829..896 | 123 | 68.1 | Plus |
UFO08573.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:35 Download gff for
UFO08573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34132-RA | 1..255 | 9..264 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:33:48 Download gff for
UFO08573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34132-RA | 140..401 | 1..264 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:01:52 Download gff for
UFO08573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34132-RA | 140..401 | 1..264 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:01:52 Download gff for
UFO08573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7885642..7885804 | 1..164 | 97 | -> | Plus |
| 2L | 7885877..7885972 | 165..260 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:33:48 Download gff for
UFO08573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7885642..7885804 | 1..164 | 97 | -> | Plus |
| arm_2L | 7885877..7885972 | 165..260 | 100 | == | Plus |
