UFO08579.5prime Sequence
1135 bp (1010 high quality bases) assembled on 2011-07-29
> UFO08579.5prime
CAGTCGACATGGCAACCGGTAGAAATCGTGGTAACCACAAGGAAGGTGGC
ACTATCAACATCGGACAGCCGCTATTCCAGGTGCCTCATTCATTGCGCAA
GGAGCACGACTTTTTCAGCTCACAGCTGTTCCGAAAATTGCAGTACGACC
TGGAGGAGGTGAGCCGCAGCCAGGAGCTTTCCAAAGTGAGTCCCATAACC
CGCGACTTCATCGAGGAGGCAGCGATGACGCAGGAAATGCAAGATCTTAA
GCGTGCGGAGTTTGTGGAGAGGAAACGTCGCCAGCAATTGCGGCGGGATT
GCGAGGAACTGCGCGACTTGGCGGAGCAGCTGCGCCTAGCCGCCATTTCC
AGGGATATAGCCGAGAATTTGGAGGAGAAAAAACGTCGTCGACAGCTAGA
CATCAAATTGGAAGCCGCGGAAGTGTCCCAAGAGCGCTGTCTGCTGGAGG
TCAGGCAACGTGAGAAGGAAGTGGCTCTTAAGGAGGAACAACGCCGCCTT
AGGGAGTCCTTGGCTGAACAAATGGAGGAGAACCGCCGACGGCGCCTGCA
AGAGCACGCTCAGGTGATGAATGACCGGGAGCTGAGCCTTCTGATGCAGA
AGCAAATCCAGGAAGAGGATCGAGCCCAGGAGCTGGAGGCGCAGAGAAAA
AAACTACAAAAGCGACAGGACATGCTGCGGTCCATCAAGGAGAACCAGGA
ACTCAGAGAATGGCAGCGAGCTCAATACAACCAGGAGTTGAGTGACTTAG
TCCAGAAGCAAAGTGACATGGAGCGCAGAAACTCCAGCTGGAGGCTGAAC
GCCAGGAGATTCAACGCAAAAAACAAGAAATCAGCATTCGTTTGGGCCAG
CAAGTCCTAGAAATCGAAAACAAAAAACGGCATCGCGACAATCTGCTGCT
GGATCTGTTGGAGGCGGAGTACACGGCCCAGAGTGACGAGCGCTATCGCC
AACAGATGCAGCAAGGAGCAGATGTCTCGCAGCGCAACAGACAGGAGTTG
CATCGCTATCGACAGAAGGTGAGCATCGTAGGATGCCGAAATGCAAATGA
AGCGGGCGGAAATGGCTACGCCGGCAGGAGAAGGCCCGATACCATTCAAC
TAGAATTCCGAAAGCACTGATGAAATTCCGGACGC
UFO08579.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7352-RA | 1524 | CG7352-RA | 45..1153 | 8..1113 | 5185 | 98.3 | Plus |
| CG7352-RC | 1522 | CG7352-RC | 58..1151 | 23..1113 | 5110 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8347763..8348624 | 8..868 | 4260 | 99.9 | Plus |
| 3R | 32079331 | 3R | 8348679..8348925 | 869..1113 | 735 | 92 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:29:02 has no hits.
UFO08579.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:36 Download gff for
UFO08579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7352-RA | 42..1167 | 1..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:33:51 Download gff for
UFO08579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7352-RA | 42..1167 | 1..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:01:56 Download gff for
UFO08579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7352-RA | 42..1167 | 1..1124 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:01:56 Download gff for
UFO08579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8347760..8348624 | 1..868 | 99 | -> | Plus |
| 3R | 8348679..8348939 | 869..1124 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:33:51 Download gff for
UFO08579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4173482..4174346 | 1..868 | 99 | -> | Plus |
| arm_3R | 4174401..4174661 | 869..1124 | 92 | | Plus |
