UFO08580.5prime Sequence
1124 bp (967 high quality bases) assembled on 2011-07-29
> UFO08580.5prime
CAGTCGACATGGAATTTCTGGAGAACCTGTACAAAACGCTGCACTCCCTG
TTGTCCTCCTACATCGATCTGGACTATTCGCTATGGCTATATCGCTTCCT
CACCCCCCTGATTGTCACCTTTCTGCTGCCGCTGGTCTTCGTGGCCCTCA
TCTACATTTCGTTCCTGGTGCTATTCATCTACAAGCTGCACAGGCAGGTA
ATAATGCGCGCCGTGCAGGGCGATCGCAATTTTTGGCGAGTGGGCCGCAA
GATAGTGGCCGCCATTTGGGATGCACATGCTCGGATCTATCATGGCTACG
AGGTGATCGGATTGGAGAATGTGCCACAGGAGGGACCGGCGCTGATTGTC
TACTATCATGGCGCCATACCCATCGATATGTACTACTTGAATTCGCGAAT
GTTGCTGCAGCGCGAGCGTTTGATCTACACGATCGGCGATCGATTTCTGT
TCAAGCTGCCCGGCTGGGGCACCATCTCTGAGGCATTCCACGTCAGTCCC
GGCACGGTGCAGTCGTGCGTTAGCATTTTGCGGGATGGCAATCTGCTGGC
CATTTCGCCGGGCGGCGTTTATGAGGCACAGTTCGGTGATCACTACTACG
AGCTGTTGTGGCGCAATCGTGTCGGTTTCGCCAAGGTGGCCATCGAGGCA
AAGGCGCCCATCATTCCCTGCTTTACGCAGAATCTGCGCGAGGGCTTCCG
TCAGTGGGCATCTTTCGGACGTTCTTCATGCGACTGTACAATAAGTGCGC
ATACCGGTGTATCCCATCTACGGTGGCTTTCCCGTCAAGTTTCGGACGTA
TCTGGGCAAGCCTATACCCTACGATGAGAACCTAACCCCGCAGATCTGCA
ATCAAGTGGCTACGGCTATCGAGGATCTGATCAATCAACACCAGCGACTG
CCCGGCAGCATCCTGCTGGCCTCTGCTGGATCGACTGCCCACGTTTAGCG
ACGCGTACGCGACGGAGAGCAGCTTTCTAGACATTCGTTGGCGCCGCGGC
CAGGTAGTGGTCATATCATAATCATAATCATATCATATCAACTAGCCTAG
GAGAATCTTGTCATGACTATGCTGAATTCTCACAATAAAAACGCCGGCGC
CACCGGAACGTTCTGGAACCATTC
UFO08580.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34348-RA | 2190 | CG34348-RA | 580..1535 | 9..959 | 4610 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11343243..11343897 | 191..843 | 3175 | 99.7 | Plus |
| X | 23542271 | X | 11340607..11340746 | 55..194 | 700 | 100 | Plus |
| X | 23542271 | X | 11343976..11344079 | 856..959 | 425 | 98.1 | Plus |
| X | 23542271 | X | 11340452..11340497 | 9..54 | 230 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 17:29:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2190..2240 | 152..102 | 111 | 68.6 | Minus |
UFO08580.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:37 Download gff for
UFO08580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34348-RA | 1..966 | 9..972 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:33:54 Download gff for
UFO08580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34348-RA | 571..1545 | 1..972 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:01:57 Download gff for
UFO08580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34348-RA | 571..1545 | 1..972 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:01:57 Download gff for
UFO08580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11340443..11340497 | 1..54 | 92 | -> | Plus |
| X | 11340607..11340745 | 55..193 | 100 | -> | Plus |
| X | 11343246..11343912 | 194..855 | 99 | -> | Plus |
| X | 11343976..11344067 | 856..948 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:33:54 Download gff for
UFO08580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11234476..11234530 | 1..54 | 92 | -> | Plus |
| arm_X | 11234640..11234778 | 55..193 | 100 | -> | Plus |
| arm_X | 11237279..11237945 | 194..855 | 99 | -> | Plus |
| arm_X | 11238009..11238100 | 856..948 | 98 | == | Plus |
