UFO08583.5prime Sequence
1134 bp (1023 high quality bases) assembled on 2011-07-29
> UFO08583.5prime
CAGTCGACATGGCAGGCAACGCCAACAGTGACGACGAATTCCATGATGCG
ATCGGGGAGGAGATAACCGAAAAAGAGGCCACCAGCACGCGGCAGAGCGA
AAAGGACGTGGATGAGATCGTGGAGAAGCAAAACCAGCTGGCGTTGGATG
ACGAAGCGGAACAGGGCGCGGCTGGTGGAGATTCCATCGCGACACCAACG
ACAGTGGACTCTGAGCTAACCATTGAGGAGTTGCGCGAACGGGAGAAGGA
TCTCAGCCCAGAGCAGCTGACAGCTAACAAAGAAAAGGCCGATAAGCTGA
AAGTTGAGGGCAACGAGTTGTTCAAAAATGACGACGCCGAAGGCGCCGCC
AAGACCTACACAGAAGCCTTAGACATTTGCCCCTCGGCCAGCTCCAAGGA
GCGAGCAGTTCTCTACGGAAACAGGGCTGCTGCCAAGATTAAGCTGGAGG
CCAACAAAGCGGCCATCGACGACTGCACAAAGGCTATAGAACTGTGGCCG
GAGTATGTGAGGGTGCTTTTAAGGCGCGCCAAGCTCTATGAGCAAGAAGA
CAAGCCCGACGAGGCTCTGGAGGACTACAAAAAAGTTACTGAGATCGATC
CCGGTCAGCAGGAGGCTCGCGAGGCTCAGATTCGGCTGCCGCCAATTATA
AACGAGCGCAACGAGAAGCTCAAAAACGAGATGATGTCCAGCTTAAAGGA
CCTGGGCAACATGATACTCAAACCGTTCGGACTGTCTACACAGAATTTCC
AAATGCAACAGGATCCCAACACGGGCTCGTATTCCATCAACTTTAAAGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGT
CATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCACCGA
GCGTTCTGAACAAATCCAGATGGAGTTCTGAGTCATTACTGGATCTATCA
CAGGAGTCCAAGGCGGGCTCGATATTCAATTTACGCCCCGCCCTGCCACT
CATCGCAGTTACTGTTTTTTAATTTCATTTAGCATTTCTGGCGGACATTG
AGGCATCCAACCGCCATTGATTGACCTGAATTCG
UFO08583.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14894-RB | 1111 | CG14894-RB | 91..879 | 9..797 | 3945 | 100 | Plus |
| CG14894-RA | 948 | CG14894-RA | 91..879 | 9..797 | 3945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16442402..16442917 | 524..9 | 2580 | 100 | Minus |
| 3R | 32079331 | 3R | 16442075..16442350 | 797..522 | 1380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:29:09 has no hits.
UFO08583.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:38 Download gff for
UFO08583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14894-RA | 89..882 | 6..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:33:56 Download gff for
UFO08583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14894-RA | 89..882 | 6..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:01:59 Download gff for
UFO08583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14894-RA | 89..882 | 6..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:01:59 Download gff for
UFO08583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16442071..16442348 | 524..801 | 99 | <- | Minus |
| 3R | 16442403..16442919 | 6..523 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:33:56 Download gff for
UFO08583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12267793..12268070 | 524..801 | 99 | <- | Minus |
| arm_3R | 12268125..12268641 | 6..523 | 99 | | Minus |
