UFO08588.5prime Sequence
1084 bp (973 high quality bases) assembled on 2011-07-29
> UFO08588.5prime
CAGTCGACATGAACAAGCGCAGCGTCATCATCGCGGGAATCGTGGCCAGC
CTGTTGGGCTTGGCGCTCGGTGCCAACTTCTACTTTATGTACTACCTCAG
CGCCGAGGAGGGTCATCTGGCCAGCGTCCGGGCGCTGGAGAACATGATAC
GGCACAAGATGCGCCACCTAAAACCCAACTACCTCAATCGCAATCCCCGC
TTCTTCATGTTCCGCAACAAGCTGCTTAAGAACTACAAGGCGGCGCCGTA
CGAGAACGCCAGTGTCCTCTGGGACATTGCGAACTGGTGGCCGCACGAAA
ACGAGGTCTATCCCTTATACGACTCATCGATGGGACAGCTTTTAGAAACA
CTGCGCCGCGAACCTATCACCCGGGTGAGCAACCTGGGTCGGGGCACGCA
ACTGAAGCTCCTCGTCCGCCTTTCCCACCAGCAGAAGGTGATCTTTAAGC
CGCAATGGTATCCGCGGGAAGAGGTCATCGATGGCATGATATACAGTGGC
AAGGATCGCCACACGGCGGAAGTATATGCCTTCTATCTGGGCGCCGTGCT
CGACTTTCGATGGACGCCCATAGTGGTGGGTCGAGTGGTGAACCTGAAGA
AGGAGATATATGCCAAAGGCGATCCGGAACTCCAGCAAACCATAAACATC
GAAACGGACGAGGATGGCAGGGAGAAGTACTGCCTGTTCGGGAAGTGTCA
CTACTGCAACGAGGAGGAGACTGTTTGTGGCGATGAGCGGCACAACATTG
AAAGTGTGCTCATATATATTGTTCCGGGTACGTTGGCTAAGCGGCGATCA
CCGTGGCAACGCACCTACAAGGATGACAAGCGGGCGCCCTGGAGGACGAT
ATGACCTATTGCAAATCGTTGAAAAATAAATGGAGACCATCCGCCTGCTG
ACCTTATTAGATGCGTCTATTTTCGACTACCTATCAAAATGAGATCGCAT
CACTACGAGACGCGGAGAGCGCGTGTGCTTATAGACATGAAAGCCTTCGG
AAACCCGAACAGATCACTTGACTAATTGCGCCACCCTACAATGCCTGCCT
TCTGGAGGTCACGTTGGATCGCTGCAAGTCTTCC
UFO08588.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3631-RE | 2710 | CG3631-RE | 874..1967 | 9..1082 | 4820 | 97.3 | Plus |
| CG3631-RD | 2705 | CG3631-RD | 869..1962 | 9..1082 | 4820 | 97.3 | Plus |
| CG3631-RC | 2776 | CG3631-RC | 940..2033 | 9..1082 | 4820 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14880957..14881535 | 287..864 | 2830 | 99.7 | Plus |
| 3R | 32079331 | 3R | 14880516..14880794 | 9..287 | 1395 | 100 | Plus |
| 3R | 32079331 | 3R | 14881596..14881753 | 865..1011 | 260 | 88 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:29:12 has no hits.
UFO08588.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:38 Download gff for
UFO08588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3631-RD | 881..1919 | 1..1028 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:33:59 Download gff for
UFO08588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3631-RC | 922..1960 | 1..1028 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:02:01 Download gff for
UFO08588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3631-RC | 936..1974 | 1..1028 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:02:01 Download gff for
UFO08588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14880512..14880794 | 1..287 | 98 | -> | Plus |
| 3R | 14880958..14881535 | 288..864 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:33:59 Download gff for
UFO08588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10706234..10706516 | 1..287 | 98 | -> | Plus |
| arm_3R | 10706680..10707257 | 288..864 | 99 | -> | Plus |
