UFO08589.5prime Sequence
1116 bp (904 high quality bases) assembled on 2011-07-29
> UFO08589.5prime
CAGTCGACATGGGACGCATTTTCTTGGAACATCTTGGGGGTCTGAAACTC
TTCAATTGCGCCCAATGCCACACGAACCTGACCAACCGCAGTCAATTGAT
CAGTACCCGATTCACAGGCGCAACAGGACGCGCCTATCTGTTTAAGCGTG
TGGTCAACCTGACCTTCAGCAACATCCAGGAACGGGTCATGCTCACGGGT
CGCCACATGGTGCGCGACGTTATGTGCAAGAATTGTGGAGCCAAACTTGG
CTGGATGTACGAGTTCGCCACCGAAGAGTCACAAAAGTGGGTAAACGCGG
ATAGGCAGCTTGTCACTAGGGATTCTGGGTTATACAAGGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAG
TGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG
AACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAG
TCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAG
TACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAAC
GGCATGATGAACCTGAAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGC
GTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATT
GGCCACGTTTAAATCAAACTGGTGAAACTCACCCAGGGATTGGCTGAGAC
GAAAACATATTCTCAATAAAACCCTTTAGGAAATAGGCCAGGTTTTTCAC
CGTAACACGCCACATCCTTGCGAATATATGTGTAAAACTGCCGGAAATCG
TCGTGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAA
ACGGTGTAACAGGGTGAACACTTTCCATTATCACTGCTCACCGTCTTTCA
TGCCATACGAATTCCGGATGAGCATTCTTCAGCGGCAAGATGGTGAATAC
GGCGAATAACCTGTGCTTATTTTTTCTTTACAGGTCTTTAAAAAAGCCCG
AAATACCGACGTGACC
UFO08589.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Yippee-RB | 1293 | CG1989-RB | 341..670 | 9..338 | 1650 | 100 | Plus |
| Yippee-RA | 1136 | CG1989-RA | 341..618 | 9..286 | 1390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13386537..13386752 | 338..123 | 1080 | 100 | Minus |
| X | 23542271 | X | 13386814..13386932 | 127..9 | 595 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 17:29:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 230..289 | 904..963 | 128 | 72.1 | Plus |
UFO08589.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:39 Download gff for
UFO08589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yippee-RB | 311..652 | 1..346 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:34:01 Download gff for
UFO08589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yippee-RB | 311..652 | 1..346 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:02:03 Download gff for
UFO08589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yippee-RB | 334..675 | 1..346 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:02:03 Download gff for
UFO08589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13386537..13386748 | 127..338 | 100 | <- | Minus |
| X | 13386815..13386936 | 1..126 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:34:01 Download gff for
UFO08589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13280570..13280781 | 127..338 | 100 | <- | Minus |
| arm_X | 13280848..13280969 | 1..126 | 96 | | Minus |
