UFO08590.5prime Sequence
1120 bp (1009 high quality bases) assembled on 2011-07-29
> UFO08590.5prime
CAGTCGACATGGAATTTCCACACTTGGGACAGCACTGCAGTGAGGCAACG
TGCAACAGATTGGATTTTCTGCCCGTTAAGTGCGACTCGTGCGACAAGGT
CTTCTGCGCCTCTCACTACAGCTACGACCGCCACAGCTGTCCAGGAGCCT
ACAAGAAGAACGTTCAGGTGCCCGTCTGCCCACTGTGTCGGGAGCCCGTG
CCCACGCCACCCGGAGTGGAGCCCGATGTCACTGTTGGCCAGCACATTGA
CCAGCAGTGCAAATCGGAGAGCAAGAAGATCTACACCAATCGCTGCAATG
CCAAGGGCTGCAAGCGAAAGGAGCTCATCCCGGTGACCTGCTCGCAGTGT
CGCTTGAACTTTTGCCTGCGTCATCGACACACCAGCGACCACGACTGCAA
GCCAGTGCCTGCATCTTCGACAACGTCCAGCCGTGGGGGATTTCAGTCCA
TATTCAAGACCTCCTCGGACTCACGATCCATGGCTGCCCAGGCGGCCGAG
AGAAGGCAGAACAGAAGGCCCGCGAGCAATAGCATCAGCAATACCAATTC
CAGACCTCGACCTGTGCAGGCCACACAAGTACAAAACATACAGGGCAATA
TGAGCGAAGACGAGGCCCTAGCACGAGCACTAGCCTTATCCATTATGGAG
CAGGATGACGCGGCGGAAAGCAACCGTCAAGCTCCGGCACCAAGCAACGC
CCAGCAAGTGGCTGTTGGCGGTGGTGGCAATCAGCAGGAAATGGCAAGGA
CAAGTGCCTGCTGTCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGAGATCCTGGTCATGACTAGTGCTTGGAATCTCACAATAAAAA
ACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGAATGGAGTTCTGA
GGTCATTACTGGATCTATCAACAGGAGTCAAGCGAGCTCGAATATCAAAT
TACGCCCGCCTGCAACTCATCGCAAGTAACTGTTGTATCATTAAGCATCT
GCGAACATGAAGCAATCCAAACGCATGAATGAACTGAATCGCAACGGATC
AGACCTTTTCGCTTTGCTTA
UFO08590.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12795-RB | 1072 | CG12795-RB | 151..910 | 8..766 | 3775 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3452739..3453278 | 63..602 | 2700 | 100 | Plus |
| 2L | 23513712 | 2L | 3453428..3453593 | 602..766 | 780 | 99.4 | Plus |
| 2L | 23513712 | 2L | 3452616..3452671 | 8..63 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:29:19 has no hits.
UFO08590.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:40 Download gff for
UFO08590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12795-RB | 157..928 | 1..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:34:02 Download gff for
UFO08590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12795-RB | 142..910 | 1..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:02:05 Download gff for
UFO08590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12795-RB | 142..910 | 1..766 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:02:05 Download gff for
UFO08590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3453429..3453593 | 603..766 | 99 | == | Plus |
| 2L | 3452607..3452671 | 1..63 | 93 | -> | Plus |
| 2L | 3452740..3453278 | 64..602 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:34:02 Download gff for
UFO08590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3453429..3453593 | 603..766 | 99 | == | Plus |
| arm_2L | 3452607..3452671 | 1..63 | 93 | -> | Plus |
| arm_2L | 3452740..3453278 | 64..602 | 100 | -> | Plus |
