UFO08593.5prime Sequence
1129 bp (996 high quality bases) assembled on 2011-07-29
> UFO08593.5prime
CAGTCGACATGAAACTGTTCGTATTCCTGGCCTTGGCCGTGGCCGCAGCT
ACTGCTGTGCCCGCTCCCGCCCAGAAGCTGACCCCGACGCCCATCAAGGA
CATTCAGGGTCGCATCACCAACGGCTACCCAGCCTACGAGGGCAAGGTGC
CCTACATCGTGGGTCTGCTCTTCAGCGGCAACGGAAACTGGTGGTGCGGT
GGCTCGATCATCGGCAACACCTGGGTCCTGACCGCCGCCCACTGCACCAA
CGGAGCCAGTGGAGTGACCATCAACTACGGAGCCAGCATCCGCACCCAGC
CCCAGTACACCCACTGGGTGGGCAGTGGCGACATCATCCAGCACCACCAC
TACAACAGCGGCAACCTGCACAACGACATCTCCCTGATCCGTACCCCGCA
CGTCGACTTCTGGAGCCTGGTCAACAAGGTTGAGCTGCCCAGCTACAACG
ACCGCTACCAGGACTACGCCGGATGGTGGGCCGTGGCCTCCGGATGGGGC
GGCACCTACGATGGCAGCCCACTGCCCGACTGGCTCCAGTCCGTCGATGT
CCAGATCATTTCCCAAAGTGATTGCAGCCGCACCTGGTCTCTCCACGACA
ACATGATCTGCATCAACACTGACGGAGGCAAGTCCACCTGCGGAGGCGAC
TCTGGTGGCCCCCTGGTTACACACGACGGCAACCGCCTGGTCGGAGTGAC
CTCCTTCGGATCCGCCGCTGGCTGCCAGTCTGGTGCTCCCGCCGTCTTCA
GCCGCGTCACCGGATACCTGGACTGGATCCGCGACAACACCGGCATCTCC
TACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGG
TCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAAAT
CCTGGTCATGACTAGTGCTTGGATTCTTCACCAATAAAAAACGCCCGGCG
GCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGTCATTACTGA
TCTATCAACAGGAGTTCAAGCGAGCTCCGAATAATCAATTACGCCCGCCC
TGCCACTCAATCGCAGTATCTGTTTTTATTTCAATAGCCATCTGCGACAT
GAAGCCATTCCAACGCATGAATGATCTGA
UFO08593.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon99Cii-RA | 862 | CG31034-RA | 29..823 | 9..803 | 3975 | 100 | Plus |
| Jon99Ciii-RB | 1240 | CG31362-RB | 27..821 | 9..803 | 3930 | 99.6 | Plus |
| Jon99Ciii-RA | 837 | CG31362-RA | 27..821 | 9..803 | 3930 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29923793..29924587 | 803..9 | 3975 | 100 | Minus |
| 3R | 32079331 | 3R | 29922242..29923036 | 9..803 | 3930 | 99.6 | Plus |
| 3R | 32079331 | 3R | 30488988..30489788 | 9..803 | 2860 | 90.8 | Plus |
| 3R | 32079331 | 3R | 30487103..30487903 | 803..9 | 2800 | 90.3 | Minus |
| 2L | 23513712 | 2L | 4952599..4952996 | 500..106 | 695 | 78.9 | Minus |
| 2R | 25286936 | 2R | 8691581..8691968 | 106..499 | 670 | 79.2 | Plus |
| 2L | 23513712 | 2L | 4949975..4950403 | 803..378 | 640 | 77.2 | Minus |
| 2L | 23513712 | 2L | 4954674..4955009 | 458..120 | 625 | 79.6 | Minus |
| 3R | 32079331 | 3R | 29925917..29926066 | 248..102 | 220 | 78 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:29:28 has no hits.
UFO08593.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:42 Download gff for
UFO08593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon99Cii-RA | 25..824 | 9..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:34:10 Download gff for
UFO08593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon99Cii-RA | 29..828 | 9..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:02:12 Download gff for
UFO08593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon99Cii-RA | 29..828 | 9..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:02:12 Download gff for
UFO08593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29923788..29924587 | 9..809 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:34:10 Download gff for
UFO08593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25749510..25750309 | 9..809 | 99 | | Minus |
