UFO08595.5prime Sequence
1115 bp (1000 high quality bases) assembled on 2011-07-29
> UFO08595.5prime
CAGTCGACATGAAGTACTTCGTTGCCATCGCTCTGCTGTTCGCCGCCGCT
CAGGCTGTTCCCATCGAGCTGGGCCACTACGCCCCTGCGCTGGTGCATCA
TGCGCCAGTCCTGTCGCACGCCGTCCATGCCGTCCACGCCGAGCCGGTGG
CCTATCCCAAGTACTCCTTCAACTACGGCATTAAGGATCCCCACACCGGC
GACATCAAGTCGCAGGCCGAGGAGCGCGACGGCGATGTGGTGAAGGGCCA
GTACTCCCTGGTTGAGCCCGATGGTTCGGTGCGCACCGTTGACTACACCG
CCGACGACCACAATGGCTTCAATGCCGTCGTCCACAAGACCGCCCCCAGT
AAGATCATCGCCCATGCACCCGTGCTGCATGCCGCCCCCGTTTTGGCCCA
CGCCCCCCTTCTGCATCACTACGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAAT
CACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACC
AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGA
GTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGAT
ATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCAT
TAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGA
ATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCAT
GGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAA
AACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAACATATTCTCAT
AACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTG
CGAATATATGTGTAGAACTGCGGAAATCGTCGTGGTATTCACTCCAGGAG
CGATGGAAACGTTCAGTTTGCTCATGAAAACGGGTTGTACAGGGTGACAC
TATCCATATCACAGCTCACCGTCCTTTCATGCCCACGATTCCGATGAACT
TCTCAGGCGGGCAGA
UFO08595.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34461-RB | 1873 | CG34461-RB | 165..578 | 9..422 | 2070 | 100 | Plus |
| CG34461-RA | 681 | CG34461-RA | 165..578 | 9..422 | 2070 | 100 | Plus |
| Cpr62Bc-RB | 1017 | CG1919-RB | 228..426 | 150..348 | 455 | 81.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8326146..8326380 | 13..247 | 1175 | 100 | Plus |
| 3L | 28110227 | 3L | 8326836..8327012 | 246..422 | 885 | 100 | Plus |
| 3L | 28110227 | 3L | 1840989..1841201 | 348..136 | 465 | 81.2 | Minus |
| 3L | 28110227 | 3L | 8337917..8338105 | 155..343 | 375 | 79.9 | Plus |
| 2L | 23513712 | 2L | 9932732..9932865 | 325..192 | 205 | 76.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:29:31 has no hits.
UFO08595.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:43 Download gff for
UFO08595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34461-RA | 161..578 | 9..427 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:34:13 Download gff for
UFO08595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34461-RA | 165..582 | 9..427 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:02:14 Download gff for
UFO08595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34461-RA | 165..582 | 9..427 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:02:14 Download gff for
UFO08595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8326146..8326379 | 13..246 | 100 | -> | Plus |
| 3L | 8326837..8327012 | 247..422 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:34:13 Download gff for
UFO08595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8319246..8319479 | 13..246 | 100 | -> | Plus |
| arm_3L | 8319937..8320112 | 247..422 | 100 | == | Plus |
