UFO08602.5prime Sequence
1163 bp (1039 high quality bases) assembled on 2011-08-05
> UFO08602.5prime
CAGTCGACATGGTGGTTACTCGCAGTGCAGCTACGAAGAAGCAGAACCAA
GTGCTGACCTTATCTGACCAGAACATCCTAGCAGAATCTTCGAGGACCAA
AGGACCTCCTGTGCCCAAGAAGAATGTTAAGAAATTGCCGACTGCACGTC
AGTGTGTCAAGGTGGCTGCAAATCTTCTAGACGCACAAGAACCTAACGAA
AATGAAAACACAGGAACCCAAAGGAAGGATGGAAAGCAACTGGATTCCAA
ATTGAGTTCCACAGTCCAAAATACAGAAGCAGCGAGGTCCAAAGAAACTC
CTGCACCCAAGAAGAATGTTAAGAAACTGCAGGCTGCACTTCCGTGCGCC
GACGCGGCTGCAAATCTTTTGGAGGAACAAGCATCTAATGAAATGAATGA
AGAAGGACCTCCTGTGCCCAAGAAAAATGTTAAGAAACTTCCGGCTGCAC
GTCAGTGTGTCAAGGTGGCTGCAAATCTTCTAGACGCACAAGAATCTATC
GAAAATGAAAAAACAGGAACAAAAAGGAAGGATGGGAAGCAACTGCAGGC
ACAAAATTCGAATGAAAATGAAAAAACAAGCACATTAAAGAAGGATAAAA
AACTACTGGCTTCCAAAACTCCAGAAGCAGCGACAAACGATAATGCAAAT
CCAAATATGAAACCAAGCCTAAAGAAGTCGACAAGGGAGCACAAGTCCAA
AAAGTGTAATGACATTCAAAAAGCTGGAAAAGATCACATCGAACATCAAG
CCGAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGC
GGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACT
GGATCTATCAACAGGAGTCCAAGCGAGCTCGATTATCAATTACGCCCCGC
CCTGCCACTCATCGCAGTACTGTGTATCATAAGCATTCTGCCGAATGAAG
CATCACAAACGGCATGATGAACCTGAATCGCAGCGGCATCAGCACTTGGT
CCGTCTTGCATAAATTTGCCCATGTGAAACGGGGGCGAAAAGTGGTCCAA
ATGGGCCACGATT
UFO08602.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:35:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31406-RB | 1010 | CG31406-RB | 160..906 | 9..755 | 3720 | 99.9 | Plus |
| CG31406-RA | 636 | CG31406-RA | 180..532 | 403..755 | 1675 | 98.3 | Plus |
| CG31406-RA | 636 | CG31406-RA | 89..322 | 9..242 | 1110 | 98.3 | Plus |
| CG31406-RB | 1010 | CG31406-RB | 251..393 | 403..545 | 565 | 93 | Plus |
| CG31406-RB | 1010 | CG31406-RB | 554..696 | 100..242 | 550 | 92.3 | Plus |
| CG31406-RB | 1010 | CG31406-RB | 434..544 | 91..201 | 225 | 80.2 | Plus |
| CG31406-RB | 1010 | CG31406-RB | 242..352 | 283..393 | 225 | 80.2 | Plus |
| CG31406-RA | 636 | CG31406-RA | 171..281 | 283..393 | 225 | 80.2 | Plus |
| CG31406-RB | 1010 | CG31406-RB | 449..538 | 409..498 | 195 | 81.1 | Plus |
| CG31406-RB | 1010 | CG31406-RB | 560..649 | 298..387 | 180 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:35:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10349180..10349482 | 207..509 | 1500 | 99.7 | Plus |
| 3R | 32079331 | 3R | 10348920..10349117 | 9..206 | 990 | 100 | Plus |
| 3R | 32079331 | 3R | 10349796..10349906 | 645..755 | 555 | 100 | Plus |
| 3R | 32079331 | 3R | 10349011..10349117 | 403..509 | 445 | 94.4 | Plus |
| 3R | 32079331 | 3R | 10349376..10349482 | 100..206 | 430 | 93.5 | Plus |
| 3R | 32079331 | 3R | 10349668..10349744 | 573..649 | 370 | 98.7 | Plus |
| 3R | 32079331 | 3R | 10349545..10349607 | 510..572 | 315 | 100 | Plus |
| 3R | 32079331 | 3R | 10349002..10349112 | 283..393 | 225 | 80.2 | Plus |
| 3R | 32079331 | 3R | 10349256..10349366 | 91..201 | 225 | 80.2 | Plus |
| 3R | 32079331 | 3R | 10349271..10349360 | 409..498 | 195 | 81.1 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:35:06 has no hits.
UFO08602.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:31 Download gff for
UFO08602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31406-RB | 89..841 | 9..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:23:22 Download gff for
UFO08602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31406-RB | 160..912 | 9..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:43:22 Download gff for
UFO08602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31406-RB | 160..912 | 9..764 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:43:22 Download gff for
UFO08602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10349668..10349739 | 573..644 | 100 | -> | Plus |
| 3R | 10349796..10349912 | 645..764 | 96 | == | Plus |
| 3R | 10348920..10349117 | 9..206 | 100 | -> | Plus |
| 3R | 10349180..10349482 | 207..509 | 99 | -> | Plus |
| 3R | 10349545..10349607 | 510..572 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:23:22 Download gff for
UFO08602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6174642..6174839 | 9..206 | 100 | -> | Plus |
| arm_3R | 6174902..6175204 | 207..509 | 99 | -> | Plus |
| arm_3R | 6175267..6175329 | 510..572 | 100 | -> | Plus |
| arm_3R | 6175390..6175461 | 573..644 | 100 | -> | Plus |
| arm_3R | 6175518..6175634 | 645..764 | 96 | == | Plus |
