UFO08603.5prime Sequence
1108 bp (988 high quality bases) assembled on 2011-08-05
> UFO08603.5prime
CAGTCGACATGCCACAGTCAGAGGGCGGCTATGTATCGCTGCCGGCCGTC
AATGGCAATGGCGGCGCCATCTATCAGTCGACCACAGAGCCCACGGCCCC
GCCCTCCGTTTTTGCGAGCGTGAAGCGGGCCATTGGCCAGGCCATCAAGT
CCTCGCCCACCGACAGCGAGGAGCTGCTCCGGTCGGACCGCCTGCCGGTC
ATCGTCGGCGGCTCCAGCACCATGCCCGTTGATCCCATGGATGACATCGA
ACTGCGCTCCGTGCAGCTGCAATTCCCCAATGCCCGCGGCTCCATCCTGG
AGGCCTGCGAACAGCGACGCGTGCCCACAGACAAGGGCGATGTCCACGTG
GCCATACAGGGCGATACGGCCAAGCCGGCCATTATCACCTACCACGATTT
GGGCCTCAACTACGCCACCAGCTTTGCTGGCTTCTTCAATTTTCCAGTGA
TGCGAGGTTTGCTGGAGAACTTCTGTGTTTACCATGTGACTGCTCCTGGC
CAGGAGGAGGGTGCACCCACTTTGCCAGAGGATTACGTGTATCCGACCAT
GGATGATCTGGCCGCCCAGCTGCTTTTCGTGCTATCCCACTTTGGCCTGA
AGTCGGTGATTGGTTTCGGCGTTGGGGCCGGGGCGAATATTCTGGCCCGT
TTCGCTCACGCCCATCCGGACAAGGTGGGCGCCCTGTGCCTGATCAATTG
CGTGTCCACGCAGTCGGGCTGGATCGAGTGGGGCTACCAGAGCTTCAATG
CCCGCTTCTTGCGCACCAAGGGCATGACACAGGGCGTGATCGATTATCTG
ATGTGGCACCACTTTGGACGCAATCCGGAGGAGCGCAATCACGACCTGTG
CAGATGTACAAGCAGCACTTCGAGCGTGCGTTAATCCGACCAATCTTGCC
ATGCTGATCAACGCGTACATCCATCGCAACGACCTGCATCTGGCGCGCAC
TCGCAGGACCCCGGCAGCGAAACGGCGCACACGCTGAGATGCGGTGATCA
TATTACGGGTTCGCCTTCTCGCCGCACGTCGACGAAACGTGACTCATGCC
GCTTAGAATCCTACACTCATCTTGGATGAGATTCGATGGCCTTGAGCTGG
AGGAACGA
UFO08603.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:35:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MESK2-RK | 2109 | CG15669-RK | 602..1689 | 8..1079 | 4720 | 96.6 | Plus |
| MESK2-RJ | 2702 | CG15669-RJ | 381..1261 | 215..1079 | 3685 | 95.8 | Plus |
| MESK2-RC | 2193 | CG15669-RC | 895..1773 | 217..1079 | 3675 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:35:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21511404..21511825 | 533..952 | 1920 | 98.1 | Plus |
| 2R | 25286936 | 2R | 21507513..21507722 | 8..217 | 1050 | 100 | Plus |
| 2R | 25286936 | 2R | 21510865..21511060 | 216..411 | 980 | 100 | Plus |
| 2R | 25286936 | 2R | 21511123..21511243 | 412..532 | 575 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:35:10 has no hits.
UFO08603.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:32 Download gff for
UFO08603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK2-RF | 381..594 | 8..220 | 99 | <- | Plus |
| MESK2-RF | 678..1511 | 221..1043 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:23:53 Download gff for
UFO08603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK2-RK | 602..1648 | 8..1043 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:43:23 Download gff for
UFO08603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK2-RK | 602..1648 | 8..1043 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:43:23 Download gff for
UFO08603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21507513..21507722 | 8..217 | 100 | -> | Plus |
| 2R | 21510867..21511060 | 218..411 | 100 | -> | Plus |
| 2R | 21511123..21511243 | 412..532 | 98 | -> | Plus |
| 2R | 21511404..21511925 | 533..1043 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:23:53 Download gff for
UFO08603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17395018..17395227 | 8..217 | 100 | -> | Plus |
| arm_2R | 17398372..17398565 | 218..411 | 100 | -> | Plus |
| arm_2R | 17398628..17398748 | 412..532 | 98 | -> | Plus |
| arm_2R | 17398909..17399430 | 533..1043 | 95 | | Plus |
