UFO08604.5prime Sequence
1119 bp (1041 high quality bases) assembled on 2011-08-05
> UFO08604.5prime
CAGTCGACATGTCGAATACTTCAGTTCGCCCGATTCCAACGTTAAAGGGC
ATCTTTTCGGTGCCGCGCGTCACACAGTCCCGAAACTTCCTCAAGGAAAA
CAAGGTGAGCCTGCGCTCGCTGGAAAAGTCCACCAGCCAGAAGTTGGCCG
CTAAGGAGCCGACGCGCCCGAAATGGATGCCCCCGCTGCGACGCTCTTCC
TCCGTGATGGGAGACTCAAAGGCGGAGAAACCAGCAGCTAAGGGCAAAAC
TATAAAACAGAACTCGTTGCAAAATGGCCGCAGCACCTCTCGCTCACAGC
ACCAACTGGCCGTGGCCGTTCCGGCGGAGGGGGAACGCTTCGATGGCCTG
GAGGAGCGCAATCCCATCTTATATGACCCGTCGGAGAACTTAGAATCCGA
GAATCTCCAAGAGCCTTCGTCGGATACAGACATTGATCGCTGTCAATCGT
GTGGCACGAATCGGAGCTCCACCAGCATAGCCATCCAAACTGAGGACATT
ACCGACGAACTCTATCTAACAAATGCTCTGAAGAAATGTAACTTTGATGC
CAGATCTATACTGGAGGAATCCGGTGCAAAATACGGGGAAAACTACAAAC
CCATGCAATATGAAAACGAGGAAGATTTGGAACAGTTGCCGCTTTCGGCG
CGTTCGAACTCCTCGAAGCAGAGTCGCTTCAACATGTCCGAAATGGAGGC
TATGCCCATGACCGAGGCCGAACCTGCAAACTACGGCGCCTCAGACGACG
AGGCTCCACTCAGTGCCCGTAGTCGTTTCACAACGGCCTCCAATGTCACC
ACCATAAGCTCTAAGTCAAAGCGTCGTGAGCATAAACTAGGATCCCGAGA
TGAGGTGCGCTTGCCGCGTTACCTGCAAAAGCAGAAGCGCGAGAAGCGGT
GGCCAAGCAGCTTGCGGAATCGCTGGATCCCGACTGTCCGCGTGCCATGT
GTTGCTCAGCGATCAGACCGACTGACGCACCTCACTAATGCTAGAAACGC
TACGAACAGCTGGTTAATGACTGACCACATGCCCATGACTGCACAGACGT
GAGGGTGCGCACCGCAAGGCGGAGATCGACATGACTGACCACTGTTGAGG
AGGAATTCCGCATATCTCC
UFO08604.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:35:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11125-RC | 2177 | CG11125-RC | 180..1298 | 7..1115 | 5240 | 98.5 | Plus |
| CG11125-RA | 1597 | CG11125-RA | 180..1298 | 7..1115 | 5240 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:35:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7447787..7448265 | 67..545 | 2335 | 99.2 | Plus |
| 2R | 25286936 | 2R | 7448312..7448619 | 536..843 | 1540 | 100 | Plus |
| 2R | 25286936 | 2R | 7448783..7448935 | 844..993 | 600 | 97.4 | Plus |
| 2R | 25286936 | 2R | 7447652..7447712 | 7..67 | 305 | 100 | Plus |
| 2R | 25286936 | 2R | 7448994..7449116 | 999..1115 | 260 | 90.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:35:14 has no hits.
UFO08604.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:33 Download gff for
UFO08604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11125-RA | 166..1281 | 1..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:24:24 Download gff for
UFO08604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11125-RA | 172..1287 | 1..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:43:26 Download gff for
UFO08604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11125-RA | 172..1287 | 1..1104 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:43:26 Download gff for
UFO08604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7447644..7447711 | 1..66 | 94 | -> | Plus |
| 2R | 7447787..7448255 | 67..535 | 99 | -> | Plus |
| 2R | 7448312..7448619 | 536..843 | 100 | -> | Plus |
| 2R | 7448783..7448941 | 844..998 | 96 | -> | Plus |
| 2R | 7448994..7449105 | 999..1104 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:24:24 Download gff for
UFO08604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3335149..3335216 | 1..66 | 94 | -> | Plus |
| arm_2R | 3335292..3335760 | 67..535 | 99 | -> | Plus |
| arm_2R | 3335817..3336124 | 536..843 | 100 | -> | Plus |
| arm_2R | 3336288..3336446 | 844..998 | 96 | -> | Plus |
| arm_2R | 3336499..3336610 | 999..1104 | 91 | | Plus |
