UFO08605.5prime Sequence
1077 bp (976 high quality bases) assembled on 2011-08-05
> UFO08605.5prime
CAGTCGACATGCGGACGCATCTTTTTGCGCTTTGCCTGTCTATGGCTACA
ATAGGCATACCCAAAGCTAATGGAGTCATGGACGATTACGATGCTGAGAT
GGGGGAGTTCATGAATGCTCTACCGAACCTCGATGATACCCCCTATGGCT
TAGGACAGCGATCAGATATCTCAACGGAACCGGAAGAGGATGATATTTTG
GCAAGCCTGGATGATGAGTATGAGGAGGCTAAGCATTGCGTCTGGAACAC
TTGTGACAAGGATCTCAGCGAATCGCGGGGAATCGGAAAGTTTCTGGACC
TACCCTTTATAAAGAAGATAGCAAGTAACCTGAATCCATTCGGCAGCAAG
AAACTTCGCATGCACTTCTATCTCTTTAAGAGGGAGTTCCCTGAGTGTGG
CAGAGAGGTGGATTTCTCAATCGAGCGCAAATGGAGGCATTGTGGCTTTA
ATGCTTCTCTGCCCACACGACTGATGATACACGGTTGGATGAGCCAGTCG
CGTGGCTCTTTCAATCGGGATGTGAAGAATGCATACCTAAAAAAAGGGGA
GTACAATGTGATCGTTGTCGATTGGAGCGCAAGCTCAGCCAACATAAACT
ACTTTTCGGTGGTAAAGCTTATAGAGACCTTTGGAGCTGAGTTGGCCCAA
TTTATAAGGAACCTCAATCGTCAGTTTGGAGCTGACTTCGACAGCATGTA
TCTTATTGGTCACTCCTTGGGAGCTCAGATCGCTGGTTCTGCCGGGAAAC
GTTTGAAACCGGTTAAAGTAAATACAATATTTGCTTTGGATCCCGCAGTC
CAAAGTTCCCGTCATCGCGGACTGAATTTCGGATAGATCCCAGCGATGCA
AAGTATGTGAGTCCATGCATACGAGTGCTACTTTGGGTTTCGTCGGCCTA
CAGGCAGTGCCACCTTTTATCCAAACTACGGGGCCTATCAGCATAGCTGC
TACTACTAAGTTGCTCCAAATTCGATCTATCAGATGTCCGCGAGTCATCA
CTCGCCTTTGGGATCTGGGGAACCCTTGCTCTCGAAAAGTGAAGGTGTAC
TGGCAGTATAGCCGCGTACGTCATTCC
UFO08605.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:35:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6675-RB | 1425 | CG6675-RB | 153..1179 | 9..1025 | 4765 | 98.3 | Plus |
| CG6675-RC | 1413 | CG6675-RC | 153..1167 | 9..1025 | 4575 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:35:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22109221..22110127 | 53..956 | 4295 | 99 | Plus |
| 2L | 23513712 | 2L | 22109116..22109162 | 9..55 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:35:18 has no hits.
UFO08605.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:34 Download gff for
UFO08605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6675-RB | 153..1190 | 9..1035 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:24:53 Download gff for
UFO08605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6675-RB | 153..1190 | 9..1035 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:43:27 Download gff for
UFO08605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6675-RB | 153..1190 | 9..1035 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:43:27 Download gff for
UFO08605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22109116..22109161 | 9..54 | 100 | -> | Plus |
| 2L | 22109223..22110214 | 55..1035 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:24:53 Download gff for
UFO08605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22109116..22109161 | 9..54 | 100 | -> | Plus |
| arm_2L | 22109223..22110214 | 55..1035 | 97 | | Plus |
