UFO08606.5prime Sequence
1150 bp (1015 high quality bases) assembled on 2011-08-05
> UFO08606.5prime
CAGTCGACATGCTGCTGCCCCCGTACCAAGAAGCCTGCAATCCCGGCTTC
TGTGATTGCCCGTTTCCCAACTCCATTGAGGTTACCAACCACAAGGGCCA
TATACCCGACCTGGTCAGGTGCCAATGCGGCGAGGATGAGTCCGGAAACG
TGAATGCCTGGCGGTGGCACGCCACTGATGAATCGGATGCCGTGGTCACC
GACCGGGACATCATCTTCCATCCCACCTACAGTCAGGGCACGGCGATTGT
GAGAGGGGAACAGGCCCTAAAAACAAACATGGTGCACTTTTGGGAGATGC
GCGTCATCACGACTCTGGCCGGCACGGATGTGATGTTCGGCATCGGCACG
GAAAGCGTTAATCTAGGGCAGTTCAAGTTTCACTTTGTCTCGGCCCTGGG
CACCAATGCCCAGTCCTGGGGCTTTTCGTATTCCGGAAGGATTCAGCACT
GTGGCGAGTTACTGCCCTACGGCCAGAAGTTCTCGCAGGGCTGCTTGATT
GGTGTCTGTTTGGATCGAACGCGTGGGCACTTGGAGTTCTATTTGAACCG
CAGATCGCTGGGAGTGGCCTACACCAATGTCCCGACGGATCCGGATGTCA
AAATATATCCCATGGTCTGCTCCACAGCCGCGAAGTCCGTAATTAGGCTG
ATCAACTGCACTTCGCAACCAGTCACACTGCAGCTGCGATCTTTCCAAGC
ATTGTCCAGGCAGCCGCTCAAATTGGCCGAACTGCGTCAAATGCCGGGTC
TCAAAGGCATCATGCAATCCTACTGGTTCCTGGCACCGCCAATTCGTTAC
TCCCGGAACTCCCGCGAAAACGAATTGGATCTGGGCGACGAGCAGTGCTC
TCAGCTCCAAGCAACGGTTGAGGCGCAACAAAGTACCGAGAAACCGACGA
TGCGGCTGTTGATGAGACGACTTGTACGCCATGCACACAAATCACGTTGC
GAAGCAGTGATAGCGGCGACGAGGGAGCACACGCTAGTGTTCACGAGAAT
GTGCGACGAGTACTTCACTACTGCTTGCAGCTTTCTAGACCATTCGTTTG
GCCGCGGGCCCAGGTAGTGTCAAATCATAATCATAATCCTATCTTATTCC
CACCTAGCCTAAGAGATCTGCTATGACATGGCTTGTATCTCACAAATAAA
UFO08606.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:35:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10516-RA | 1329 | CG10516-RA | 166..1192 | 8..1026 | 4830 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:35:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15968998..15969546 | 332..878 | 2645 | 99.6 | Plus |
| 3L | 28110227 | 3L | 15968369..15968693 | 8..332 | 1625 | 100 | Plus |
| 3L | 28110227 | 3L | 15969624..15969753 | 889..1016 | 345 | 94.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:35:21 has no hits.
UFO08606.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:35 Download gff for
UFO08606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10516-RA | 197..1240 | 1..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:25:24 Download gff for
UFO08606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10516-RA | 156..1199 | 1..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:43:28 Download gff for
UFO08606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10516-RA | 156..1199 | 1..1033 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:43:28 Download gff for
UFO08606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15968359..15968693 | 1..332 | 98 | -> | Plus |
| 3L | 15968999..15969560 | 333..890 | 99 | -> | Plus |
| 3L | 15969626..15969753 | 891..1016 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:25:24 Download gff for
UFO08606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15961459..15961793 | 1..332 | 98 | -> | Plus |
| arm_3L | 15962099..15962660 | 333..890 | 99 | -> | Plus |
| arm_3L | 15962726..15962853 | 891..1016 | 94 | == | Plus |
