UFO08609.5prime Sequence
1097 bp (988 high quality bases) assembled on 2011-08-05
> UFO08609.5prime
CAGTCGACATGAACACTCTAATGAAAATTCAATTGGTTAGGCCTGTTTTT
CGCATTACGTTGAGGAATTATGGGAAACCAGAGCGATTTATGTGGTGTCA
GAAGGAGTATGCTAGAGCTCCCAAGGTGGTTTGCTTGGACGGAAATGAGA
TTCCAGTAATTGGGCTCGGAACTTTCAATAGCCCCAAGGGTCAGGTCACC
GAGGCTGTCAAAGTTGCCATTGATGCCGGATACAGGCACATTGACTGTGC
CTATGTATACCAAAACGAGGATGAGGTCGGAGATGGTGTTGAGGCCAAGA
TCAAGGAGGGCGTTGTCAAGCGTGAGGATCTGTTCATCACCAGCAAACTG
TGGAACACTTTCCATCGCCCGGATCTTGTCAAGTCGGCATTGGAGAACAC
ATTGAGCTCCCTGAAGCTGAAGTACCTCGATCTGTACCTTATCCACTGGC
CCATGGGCTACAAGGAGGGATGCGATCTGTTCCCCACCGACAAGGATGGC
AAGACGCTGTACTCGCCGGTTGATTACGTCGACACGTGGAAGGCCATGGA
GAAGTTGGTGGAAGAGGGTCTGGTCAAGTCCATTGGTGTTTCCAACTTCA
ACAGAAGGCAGATCGAGCGCGTGCTTGAGGTGGCCACTATTCCACCAGTA
ACCAATCAGATTGAGTGCCATCCATATCTGACCCAGAAGAAGCTGATTGA
CTTCTGCAAGTCAAAGGACATTACAATCACTGCCTACAGTCCCTTGGGAT
CTCCCAACCGCCCATGGGCCAAGGCTGGTGATCCGGTCATCCTAGAGGAG
GCTAAGATCAAGGAAATTGCCGCTAAGAAGAGAAGACCCCTGACAGATCC
TTATTCGATACCAAGTTCAGCGTGCCAACATTGTTATCCCCAAATCTGTG
ACCAAGACCGCATCGAGTCCACTTCAGGTCTTCGACTTCGACTGACACCT
GAGAAATCGAAATCATCGAAAGCTCGAGTGCACGCCGCCTTGTCCCCTAC
TCAGGATGCTGTACCATAGTACTATTCCGTCATGACGAGTTATGCAAGCT
TCTAAGACATTCGGTTGGGCGCCGGTCCAGTTAGTGTCATATCATAT
UFO08609.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:35:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6084-RB | 1353 | CG6084-RB | 35..1082 | 9..1040 | 4790 | 98.2 | Plus |
| CG6084-RC | 1172 | CG6084-RC | 35..1040 | 9..1003 | 4740 | 98.8 | Plus |
| CG6084-RD | 1316 | CG6084-RD | 169..1045 | 180..1040 | 3935 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:35:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11621483..11621967 | 806..322 | 2425 | 100 | Minus |
| 3L | 28110227 | 3L | 11622033..11622175 | 322..180 | 715 | 100 | Minus |
| 3L | 28110227 | 3L | 11621248..11621424 | 974..805 | 525 | 94.4 | Minus |
| 3L | 28110227 | 3L | 11624260..11624347 | 96..9 | 440 | 100 | Minus |
| 3L | 28110227 | 3L | 11624114..11624199 | 179..94 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:35:33 has no hits.
UFO08609.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:38 Download gff for
UFO08609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6084-RB | 27..1082 | 1..1040 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:26:54 Download gff for
UFO08609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6084-RB | 27..1082 | 1..1040 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:43:31 Download gff for
UFO08609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6084-RB | 27..1082 | 1..1040 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:43:31 Download gff for
UFO08609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11621215..11621422 | 807..1003 | 94 | <- | Minus |
| 3L | 11621483..11621966 | 323..806 | 100 | <- | Minus |
| 3L | 11622033..11622175 | 180..322 | 100 | <- | Minus |
| 3L | 11624114..11624198 | 95..179 | 100 | <- | Minus |
| 3L | 11624262..11624355 | 1..94 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:26:54 Download gff for
UFO08609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11614315..11614522 | 807..1003 | 94 | <- | Minus |
| arm_3L | 11614583..11615066 | 323..806 | 100 | <- | Minus |
| arm_3L | 11615133..11615275 | 180..322 | 100 | <- | Minus |
| arm_3L | 11617214..11617298 | 95..179 | 100 | <- | Minus |
| arm_3L | 11617362..11617455 | 1..94 | 95 | | Minus |
