UFO08611.5prime Sequence
1093 bp (995 high quality bases) assembled on 2011-08-05
> UFO08611.5prime
CAGTCGACATGTTTATTTGGCATTACTTGACCCTCTTGTGCCTTGGGTTC
GCCCTCATCGATGCGAAATCCATCAAGAAGTCGCAGGCCAATCTGTTGGA
GCCAACTCTTGATCCTGATGAGAAGCTAGGGAAGATTGGGAAGTCCCCAC
CCGACATTTCCAATGATGTGCAACGTGTGCAGGTTCCATTAGGTGCGACG
CCCGGCAAGAATGGCTGGCAGGGCAAGTGGTTTCCCCATGCCCCTGGACA
ACAGCAGGAAGCGATTGAATTAAAAATGAAGAGCACCACGGAGGAAGTTC
CTCCGCTGGAGTTCACAACCAAGGATGGCTGGCAGGGCAAGTGGTTTCCA
CAAGCTCCCGGAGAGCCGCACTTGGTGAAGAAAAAACCGCTGGTCGATAA
CAAAACCAAGTCGGGGAAGTCCACCACACAGGATACTTGGCAGGGTAAAT
TGTTTCCGCAGGGTCCCAATGAATCGCACAAGACTAAACAAAGCAGCTGT
GATGATGGCAAGAGCAATCTTGCCGTGGACTTCGATCCAAACGACATCCG
TGACAGCCTGAATTTCCTATGCATCAGTAGTAATCACAGCTTGTACCAAC
CGGATTTGTCCAGAGAAGCCATTCTTACGGAGCACTTTCTACCTAGCGCC
TATCTGCCGCCTGCCAAGTGCCTTAATGAGTCCATTAGCTACTCCCATCT
GCCTGCCACCAATGGCCCCTATCGCCCGATGCCCGCTGAATATGGCACCT
ATTCCTACTTGCCTCCTCAGCGATACGTGCGTAATCTGGCGGAGGGTGCC
ATCGTAATGCTCTACCATCCCTGCGCTTTTCCCGGCCAAGTGAAGCAGCT
GCAAGACATCGTGGGGTGGCTGTCTGTATCGCCATCTGGTGTCACCCTCG
CTGGCTCTGAGTCCGCAGCGACCGCTGGCCCTGCTCGCCTGGAGTCGCAG
CCTCGAGATGTCCGTCGTGATCGACACTGGCGGCGGACTTCATTCAGAAC
ACGCCAAGCAAGGACTACTTGCCACCGGGAGGAATTGTCCGCGTTTGATT
GTCCAAGAGACAGAACCTTACCAGATTCCTTCCTTAGGAAGCG
UFO08611.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:34:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12093-RA | 1296 | CG12093-RA | 106..1159 | 9..1064 | 5050 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:34:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2773399..2773902 | 512..9 | 2520 | 100 | Minus |
| 3L | 28110227 | 3L | 2772697..2773046 | 1064..713 | 1335 | 96.3 | Minus |
| 3L | 28110227 | 3L | 2773105..2773306 | 712..511 | 1010 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:34:58 has no hits.
UFO08611.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:30 Download gff for
UFO08611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12093-RA | 100..1161 | 9..1074 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:22:22 Download gff for
UFO08611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12093-RA | 106..1167 | 9..1074 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:43:18 Download gff for
UFO08611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12093-RA | 106..1167 | 9..1074 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:43:18 Download gff for
UFO08611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2772689..2773046 | 713..1074 | 96 | <- | Minus |
| 3L | 2773105..2773304 | 513..712 | 100 | <- | Minus |
| 3L | 2773399..2773902 | 9..512 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:22:22 Download gff for
UFO08611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2772689..2773046 | 713..1074 | 96 | <- | Minus |
| arm_3L | 2773105..2773304 | 513..712 | 100 | <- | Minus |
| arm_3L | 2773399..2773902 | 9..512 | 100 | | Minus |
