UFO08618.5prime Sequence
1125 bp (1026 high quality bases) assembled on 2011-08-05
> UFO08618.5prime
CAGTCGACATGAACAGCATTGGCGAGGATTGCAATGAGCTAAAGAAGCAG
TACGACGCCTGCTTCAACAGCTGGTTCTCGGAAGGCTTCCTTAAGGGCCA
GACGGATGACTCGGGCTGCGCGCCGATTTTCCGGGTCTATCAGGAGTGCG
TCAAGCGCGCCATGAGGGAGCAAAAGATTGAGCTGCGGGAGGTCGGATCT
GAGTACTGCACCGGCTCGGAGTACGACAATGCGAGTAGTTCCGGCGGAAA
GACGCAACCCAAGACAAAAAGTGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAAT
CACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACC
AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGA
GTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGAT
ATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCAT
TAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGA
ATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCAT
GGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAA
AACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCA
ATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATC
TTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCC
AGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGG
TGAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGAAA
TTCAGGATGAGCATTCATCAGCGGGCAAGAATGTGAATAAGGCCGGAAAA
ACTGTGCTTATTTTTCTTTTACGGTCTTAAAGCGTATTTTCAGCTGACCG
GTCTGGGTTATAGTACATGAGCACCTGACTGAATGCTCAAAGTTCTTACG
ATGCATTGGATTATTCACGTGTTAT
UFO08618.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:33:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30109-RB | 609 | CG30109-RB | 101..364 | 9..272 | 1320 | 100 | Plus |
| CG30108-RB | 552 | CG30108-RB | 92..261 | 9..178 | 445 | 84.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:33:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17670182..17670328 | 9..155 | 735 | 100 | Plus |
| 2R | 25286936 | 2R | 17670385..17670503 | 154..272 | 595 | 100 | Plus |
| 2R | 25286936 | 2R | 17669486..17669632 | 9..155 | 405 | 85 | Plus |
Blast to na_te.dros performed 2014-11-26 23:33:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 841..908 | 123 | 68.1 | Plus |
UFO08618.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:08 Download gff for
UFO08618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30109-RA | 768..1041 | 1..272 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:08:14 Download gff for
UFO08618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30109-RB | 91..364 | 1..272 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:36 Download gff for
UFO08618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30109-RB | 91..364 | 1..272 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:42:36 Download gff for
UFO08618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17670172..17670328 | 1..155 | 97 | -> | Plus |
| 2R | 17670387..17670503 | 156..272 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:08:14 Download gff for
UFO08618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13557677..13557833 | 1..155 | 97 | -> | Plus |
| arm_2R | 13557892..13558008 | 156..272 | 100 | == | Plus |
