UFO08619.5prime Sequence
1143 bp (1040 high quality bases) assembled on 2011-08-05
> UFO08619.5prime
CAGTCGACATGGAATGTCAGGAACTCAAGCTCGTCACGGATAAAGAACTC
ATTGATAAGAATCTTGAAAAAGAGGAGCAAACATGCAACTTAGTCCCAGC
CTGGAGCCCTAGGAATCCCTTGGAAAACAGCATCGATTGCCGCGAGAAGT
CAATTGTGGAAAACATAAATGCAGACCAGGATGCCATTGCCAAAATCCAA
TATCTTAGTTCGGAACATGCCAAGCTGGATAAGTATTTAGATAATCAGGA
GCAGGATGAATCACTTCGCAAATATCTTGTCGTTGGAGTTCATTGGGTTT
CTCTGCTCACGGAACATGTGTTGAGCCATCCGTTTCTAGTATTGCGTTGG
CAGTGTCAGGTTTATAATGCCTCCAAGTGTTACCACTTGCATCCTTTTAC
CCTGCTGCCCTGTATTGTCCACTTGCACAGACGCCAAGGACTAACGACAC
TATGGAAGGGAATGGGCAGCTGCTTGCTTGTTCGTGGAATGTCCTGCGCC
ATTGACGATGTAATATCGAAACTCAGCAGTTGGCCCAAGGAATTGGATAG
TCGAACGACCTTAAAGCGATTTGGCCAGCATGTCCTTCTGAAATCTGTAA
GCATCGCTTTGGTTTTGCCCTTCCACACCGTTTCCTTGGTGAAGACAGTG
CAAAGCGGCATTGCCAGCGACAAAACAGGACTTTTTGATGTCCTTCGAGA
AGGTGGAGCTCGCATTTTCTCATGGAGGTCCCCGCAAAATACTCGAATGC
TACCAACTTGGGCATTAATCGGTCCGAGTATTTCGATTGGCATTACAAAG
TATCTCTTCAACCTGTTAATACATGGCGTATCCACTCGAATGATGCAGAG
GAGAATGCTGGAAAATCGATGTGAAAAAACCCCGACAATAAGCTTGAAAA
CCAAAATGCGAAAACTTATGCCGGACTTATAGCCATGCTTACCACTGAGG
TTGTATTCTTCCCCCTCGAAACCATTATTGCATCGCCTAGAACTGCAAGG
CCACCGACCATAATCGATAATCTTGATACTGGTTATTCAGTTGTTCCCGT
TTTGACAGACAATCGTTGATTATCGAATGCTGCACAGTTACCGTTTATTT
CCGAGGGAGCTGCGTGACTCTACAAGCCTCGAGAACATGTATC
UFO08619.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:33:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5755-RA | 1553 | CG5755-RA | 125..1242 | 9..1125 | 5220 | 98 | Plus |
| CG8931-RA | 1454 | CG8931-RA | 326..893 | 279..846 | 440 | 72.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:33:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18096692..18097809 | 9..1125 | 5095 | 98 | Plus |
| X | 23542271 | X | 15984222..15984537 | 279..594 | 350 | 74.1 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:33:13 has no hits.
UFO08619.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:09 Download gff for
UFO08619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5755-RA | 125..1247 | 9..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:08:48 Download gff for
UFO08619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5755-RA | 125..1247 | 9..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:38 Download gff for
UFO08619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5755-RA | 125..1247 | 9..1129 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:42:38 Download gff for
UFO08619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18096692..18097814 | 9..1129 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:08:48 Download gff for
UFO08619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18096692..18097814 | 9..1129 | 97 | | Plus |
